PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG027113t1
Common NameTCM_027113
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARF
Protein Properties Length: 672aa    MW: 74613 Da    PI: 6.5567
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG027113t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.64.3e-22124224198
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++a+++       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   +
  Thecc1EG027113t1 124 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--R 212
                       99****************************975444444..8************************************************..4 PP

                       SSEE..EEEEE- CS
                B3  87 rsefelvvkvfr 98 
                        +++el+v+v+r
  Thecc1EG027113t1 213 GTNGELRVGVRR 224
                       499999****97 PP

2Auxin_resp114.31.1e-37250332183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++t+s+F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt++gv d +++ W +S+WrsLk
  Thecc1EG027113t1 250 ASHAIATGSMFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGEEVPERRFSGTIIGVGDNKSSGWADSEWRSLK 332
                       789******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-43115253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-40121239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-20122224No hitNo description
SMARTSM010194.6E-21124226IPR003340B3 DNA binding domain
PfamPF023627.6E-20124224IPR003340B3 DNA binding domain
PROSITE profilePS5086311.025124226IPR003340B3 DNA binding domain
PfamPF065071.9E-35250332IPR010525Auxin response factor
PfamPF023099.8E-12543637IPR033389AUX/IAA domain
PROSITE profilePS5174526.465547640IPR000270PB1 domain
SuperFamilySSF542771.81E-11549624No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MAFAAPSAEQ QAGIKDGPLY RELWHACAGP LVTLPREGER VYYFPQGHME QLEASMHQGL  60
EHQMPSFNLP SKILCKVASV QRKAEPDTDE VYAQLTLVPE VDQSEVTSSD PPLPEPERCI  120
VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMTQQPP WQELVATDLH GNEWHFRHIF  180
RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGTNGELRV GVRRLMRQQT NMPSSVISSH  240
SMHLGVLATA SHAIATGSMF SVFYKPRTSR SEFIVSVNKY LEARSHKLSV GMRFKMRFEG  300
EEVPERRFSG TIIGVGDNKS SGWADSEWRS LKVQWDEPSS ILRPDRVSPW ELEPLVVTNT  360
SSNSQPAQRN KRARPPVLPT PSSDLSSLGM WKSPVESPAF SYCDSQRGHS SPKFSSTAKP  420
NSVGFSGNGS VAAVSSNSMY WSNRVESVTE SFAPVVNKES CERKPGPGNG CRLFGIQLDN  480
VNMEENSPVA TVSGTVVDDR LVPSVDADSD QLSDPSNLNR SDRPYVSCDP EKSCLRSPQE  540
SQSKQIRSCT KVHMQGMVVG RAVDLTRFDC YEDLLRKLEE LFDIKGQLCG SARNWQVVYT  600
DDEDDMMMVG DDPWNEFCSM VRKIFIYTSE EVKKLSPKIK LPVNDDSKPA KPGVDTVVNT  660
DDRSSVVSPG C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013551355Auxin response factor 1
4ldw_A0.013551355Auxin response factor 1
4ldw_B0.013551355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1539830.0DQ153983.1 Gossypium barbadense auxin response factor 1 (ARF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007023118.10.0PREDICTED: auxin response factor 1
RefseqXP_017978970.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A061G7C40.0A0A061G7C4_THECC; Auxin response factor
STRINGEOY257400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88252227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  3. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  4. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  5. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]