PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG027113t1 | ||||||||
Common Name | TCM_027113 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ARF | ||||||||
Protein Properties | Length: 672aa MW: 74613 Da PI: 6.5567 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.6 | 4.3e-22 | 124 | 224 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +++a+++ ++++ + +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + Thecc1EG027113t1 124 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--R 212 99****************************975444444..8************************************************..4 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r Thecc1EG027113t1 213 GTNGELRVGVRR 224 499999****97 PP | |||||||
2 | Auxin_resp | 114.3 | 1.1e-37 | 250 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+s+F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt++gv d +++ W +S+WrsLk Thecc1EG027113t1 250 ASHAIATGSMFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGEEVPERRFSGTIIGVGDNKSSGWADSEWRSLK 332 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.66E-43 | 115 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-40 | 121 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-20 | 122 | 224 | No hit | No description |
SMART | SM01019 | 4.6E-21 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-20 | 124 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.025 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.9E-35 | 250 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.8E-12 | 543 | 637 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.465 | 547 | 640 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.81E-11 | 549 | 624 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MAFAAPSAEQ QAGIKDGPLY RELWHACAGP LVTLPREGER VYYFPQGHME QLEASMHQGL 60 EHQMPSFNLP SKILCKVASV QRKAEPDTDE VYAQLTLVPE VDQSEVTSSD PPLPEPERCI 120 VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMTQQPP WQELVATDLH GNEWHFRHIF 180 RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGTNGELRV GVRRLMRQQT NMPSSVISSH 240 SMHLGVLATA SHAIATGSMF SVFYKPRTSR SEFIVSVNKY LEARSHKLSV GMRFKMRFEG 300 EEVPERRFSG TIIGVGDNKS SGWADSEWRS LKVQWDEPSS ILRPDRVSPW ELEPLVVTNT 360 SSNSQPAQRN KRARPPVLPT PSSDLSSLGM WKSPVESPAF SYCDSQRGHS SPKFSSTAKP 420 NSVGFSGNGS VAAVSSNSMY WSNRVESVTE SFAPVVNKES CERKPGPGNG CRLFGIQLDN 480 VNMEENSPVA TVSGTVVDDR LVPSVDADSD QLSDPSNLNR SDRPYVSCDP EKSCLRSPQE 540 SQSKQIRSCT KVHMQGMVVG RAVDLTRFDC YEDLLRKLEE LFDIKGQLCG SARNWQVVYT 600 DDEDDMMMVG DDPWNEFCSM VRKIFIYTSE EVKKLSPKIK LPVNDDSKPA KPGVDTVVNT 660 DDRSSVVSPG C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 1 | 355 | 1 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 1 | 355 | 1 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 1 | 355 | 1 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ153983 | 0.0 | DQ153983.1 Gossypium barbadense auxin response factor 1 (ARF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007023118.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Refseq | XP_017978970.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A061G7C4 | 0.0 | A0A061G7C4_THECC; Auxin response factor | ||||
STRING | EOY25740 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8825 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG027113t1 |
Entrez Gene | 18595208 |