PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG027104t1
Common NameTCM_027104
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 627aa    MW: 72209.2 Da    PI: 9.7042
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG027104t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.9e-09122149126
                       --S---SGGGGTS..--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                       +k ++C  f+++   tC++G  C+F+H+
  Thecc1EG027104t1 122 WKVAICGEFMKSRlkTCSHGTACNFIHC 149
                       899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501029.47318119IPR000504RNA recognition motif domain
SMARTSM003611.0E-539115IPR003954RNA recognition motif domain, eukaryote
Gene3DG3DSA:3.30.70.3304.4E-2240117IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018482.1E-194863IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549283.29E-1651119IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018482.1E-197698IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.1E-19103127IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.559121151IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-6122149IPR000571Zinc finger, CCCH-type
PRINTSPR018482.1E-19141153IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MHGVTSVEVL GIGIGWLTLK LLANLPIITP IILDSYCISY QYTDEEVERC YEEFYEDVHT  60
EFLKFGEIVN FKVCKNGAFH LRGNVYVHYK MLESAVLAYH SINGRYFAGK QVKCEFVNLT  120
RWKVAICGEF MKSRLKTCSH GTACNFIHCF RNPGGDYEWA DWDKPPPRYW VKKMGALFGY  180
SDEAGFEKQI EQEHSGQSRN RSRVIKSDAD RHRSRRSKSR EMNRLIGGAD RSPCIEDDVE  240
ESSHSQRGKN NDRKQTKGLD GRSYRESKSL KWDQNREKNH DTSSDGGYSD SKRGKKIDRK  300
RAKTLDGRSD RQRSLTWDQN SEEIHDTSSD GGYSDSKRGK KNDRKQAKTL DGRSDRQRGL  360
KWDENSEKIH TTSSDGGYSD SKRGKENDRK QAKVLDGGRS DRQRSLTWDQ NSEEIHDTSS  420
YGGYSDSKRG KKNDRKQAKT LDGRSDRQRS LKCDENSEKI HDTSSDGSYS DSKRGKKNDR  480
KRAKTLDGRS GRQRSLKWDE NSEQIHYTSS DGGYSHSKRG KKNERKKAKL LDGRSDRHRS  540
LKWDQNRERT LDTSSDEGYS ERDIDAARDA DEVTHHCHAK EHSKHQSESL EYLADNRSFK  600
NRDYEDTENS PAQTKKRTRH RSSKGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-134114863167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021298174.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 5
TrEMBLA0A061GFD00.0A0A061GFD0_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1
STRINGEOY257250.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.15e-81C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]