PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG027032t1 | ||||||||
Common Name | TCM_027032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 291aa MW: 32519 Da PI: 4.7331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.7 | 3.6e-07 | 169 | 212 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ r+RR++i ++ +eL +l+P K+ ae+L+ A +Y++ Lq Thecc1EG027032t1 169 IAARQRRRKITDKTQELGKLIPGgH------KMRTAEMLRAAYKYVNFLQ 212 567*******************945......****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.903 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-11 | 167 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.91E-8 | 168 | 215 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-10 | 168 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-8 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-5 | 169 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MALSYCSNCL KPEISSFQQA EKELAGDYHL DSVSGFDSSL ALLDTFIDPF LQPGGLLFSD 60 GYTNLLPSLS SPPEYIISSF PPEEFEFELC QEYPKRQKNV SNYYCSNFGA NFLAGFVPNS 120 APGPAATDLF LPKIPVPLPE FEPEMPTFNC ENENAKKTSP VSVSNLQSIA ARQRRRKITD 180 KTQELGKLIP GGHKMRTAEM LRAAYKYVNF LQAQVGVLEA MWSFHQGKEE ALMHSQELPN 240 LLASQAIQEK LYSEEKCLIP KDFVQTLAND YQIQSKPLII EEINRILLTS * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017978492.1 | 0.0 | PREDICTED: transcription factor bHLH53 | ||||
TrEMBL | A0A061G741 | 0.0 | A0A061G741_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative | ||||
STRING | EOY25650 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 6e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG027032t1 |
Entrez Gene | 18595140 |
Publications ? help Back to Top | |||
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