PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG027032t1
Common NameTCM_027032
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 291aa    MW: 32519 Da    PI: 4.7331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG027032t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.6e-07169212755
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++ r+RR++i ++ +eL +l+P         K+  ae+L+ A +Y++ Lq
  Thecc1EG027032t1 169 IAARQRRRKITDKTQELGKLIPGgH------KMRTAEMLRAAYKYVNFLQ 212
                       567*******************945......****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.903162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-11167226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.91E-8168215No hitNo description
Gene3DG3DSA:4.10.280.101.4E-10168221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-8168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-5169212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MALSYCSNCL KPEISSFQQA EKELAGDYHL DSVSGFDSSL ALLDTFIDPF LQPGGLLFSD  60
GYTNLLPSLS SPPEYIISSF PPEEFEFELC QEYPKRQKNV SNYYCSNFGA NFLAGFVPNS  120
APGPAATDLF LPKIPVPLPE FEPEMPTFNC ENENAKKTSP VSVSNLQSIA ARQRRRKITD  180
KTQELGKLIP GGHKMRTAEM LRAAYKYVNF LQAQVGVLEA MWSFHQGKEE ALMHSQELPN  240
LLASQAIQEK LYSEEKCLIP KDFVQTLAND YQIQSKPLII EEINRILLTS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978492.10.0PREDICTED: transcription factor bHLH53
TrEMBLA0A061G7410.0A0A061G741_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY256500.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.16e-30bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]