PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026958t1

Common Name

TCM_026958

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 313aa MW: 35789.3 Da PI: 8.3775

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026958t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.2	2.9e-09	42	97	1	52
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....teker 52 +fY++YA +G v k + +++ +ng ++++f Cskeg+r+e+ +k +e +r Thecc1EG026958t1 42 EFYKAYACAMGLGVHKGSCRRN-KNGIEVMKHFACSKEGHRAEKWEKlenwvREPKR 97 6******************9.566677899*********98886555533333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-6	42	92	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.8E-32	207	301	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MLTSCRLMES QENNLSDAKY LHELSKDEIL GLEFDDLEDV YEFYKAYACA MGLGVHKGSC 60 RRNKNGIEVM KHFACSKEGH RAEKWEKLEN WVREPKRHIK VVDVYEAKAM KVAGIKTCQV 120 MNVFAAQVGG IQNVGFTRKD FYNRMAAKRH AKVNDGDVQA TLLYFGVKKE IDNGFYMKHT 180 TYDDNKLKNL FWADSISRLD YACFGDVLAY DTTYKKNTFN LPLLVFIGVN HHHMTTIFAL 240 ALLTNEDAES YIWALTTFLE CMMNKKPISV VIDGDRAMRK ALEMVFPGVR HRLCSWHLAR 300 NAQANVPLPG FV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN127767	3e-49	JN127767.1 Theobroma cacao clone TCC_BB056D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972576.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A061G6T4	0.0	A0A061G6T4_THECC; FAR1-related sequence 5-like protein
STRING	EOY25575	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-41	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Thecc1EG026958t1
Entrez Gene	18595089

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]