PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026907t6
Common NameTCM_026907
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HD-ZIP
Protein Properties Length: 635aa    MW: 69793.7 Da    PI: 6.8116
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026907t6genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181977357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Thecc1EG026907t6 19 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                      6789*****************************************************97 PP
2START177.11e-551693762204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++
  Thecc1EG026907t6 169 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTIE 260
                       68999*****************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   +ss+vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++l
  Thecc1EG026907t6 261 LIYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppTSSFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVL 353
                       ******************************************99999999******************************************* PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + ++k++ a+l++ +
  Thecc1EG026907t6 354 RPLYESSKILAQKMTIAALRHIR 376
                       ******************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-19477IPR009057Homeodomain-like
PROSITE profilePS5007115.6941478IPR001356Homeobox domain
SMARTSM003894.4E-151682IPR001356Homeobox domain
CDDcd000861.78E-161979No hitNo description
PfamPF000463.0E-161977IPR001356Homeobox domain
SuperFamilySSF466891.24E-161981IPR009057Homeodomain-like
CDDcd146861.62E-671110No hitNo description
PROSITE profilePS5084826.025159387IPR002913START domain
CDDcd088751.01E-74163379No hitNo description
Gene3DG3DSA:3.30.530.209.8E-24167373IPR023393START-like domain
SMARTSM002342.4E-52168378IPR002913START domain
PfamPF018523.5E-53169376IPR002913START domain
SuperFamilySSF559615.63E-39169380No hitNo description
SuperFamilySSF559615.71E-8416501No hitNo description
SuperFamilySSF559615.71E-8529611No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MALSMHKDSS NNKQMDSSKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LSAMNKLLME ENDRLQKQVS QLVYENGYMR  120
QQLQTGSATT TDNNSCESVV MSGQHQQQQN PTPQHPQRDA NSPAGLLAIA EETLAEFLSK  180
ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLEPTKVAE ILKDRPSWFR  240
DCRCLDVLSV IPTGNGGTIE LIYMQTYAPT TLAAARDFWT LRYTTSLEDG SLVICERSLT  300
SSTGGPTGPP TSSFVRAEML PSGFLIRPCE GGGSIIHIVD HVDLDVWSVP EVLRPLYESS  360
KILAQKMTIA ALRHIRQIAQ ETSGEIQYGG GRQPAVLRTF SQRLCRGFND AVNGFADDGW  420
SLMGSDGVED VTIMINSSPG KFLGSQYNTS MFPSFGGGVL CAKASMLLQN VPPALLVRFL  480
REHRSEWADY GVDTYSAACL KASPYAVPCA RPGGFPSSQV ILPLAHTVEH EEFLEVVRLE  540
GHAFTPEDVA LARDMYLLQL CSGIDENAVG ACAQLVFAPI DESFADDAPL LPSGFRVIPL  600
DPKTVTLTCQ SSAVSFSLAC LYFIGIFLKR KKRD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017979204.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X1
SwissprotO042920.0ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBLA0A061G8K40.0A0A061G8K4_THECC; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 6
STRINGEOY254960.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  4. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]