PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026907t1
Common NameTCM_026907
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92435.5 Da    PI: 6.0581
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026907t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18563357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Thecc1EG026907t1  5 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                      6789*****************************************************97 PP
2START176.41.8e-551553622204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++
  Thecc1EG026907t1 155 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTIE 246
                       68999*****************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   +ss+vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++l
  Thecc1EG026907t1 247 LIYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppTSSFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVL 339
                       ******************************************99999999******************************************* PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + ++k++ a+l++ +
  Thecc1EG026907t1 340 RPLYESSKILAQKMTIAALRHIR 362
                       ******************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.71164IPR001356Homeobox domain
SMARTSM003894.4E-15268IPR001356Homeobox domain
CDDcd000862.96E-16565No hitNo description
SuperFamilySSF466891.92E-16567IPR009057Homeodomain-like
PfamPF000464.3E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-18763IPR009057Homeodomain-like
CDDcd146862.36E-65796No hitNo description
PROSITE profilePS5084826.025145373IPR002913START domain
CDDcd088754.43E-73149365No hitNo description
Gene3DG3DSA:3.30.530.201.7E-23153359IPR023393START-like domain
SMARTSM002342.4E-52154364IPR002913START domain
SuperFamilySSF559619.61E-39155366No hitNo description
PfamPF018525.9E-53155362IPR002913START domain
SuperFamilySSF559611.54E-8402487No hitNo description
SuperFamilySSF559611.54E-8515602No hitNo description
PfamPF086707.8E-51698842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YSECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVY ENGYMRQQLQ TGSATTTDNN  120
SCESVVMSGQ HQQQQNPTPQ HPQRDANSPA GLLAIAEETL AEFLSKATGT AVDWVQMIGM  180
KPGPDSIGIV AVSRNCSGVA ARACGLVSLE PTKVAEILKD RPSWFRDCRC LDVLSVIPTG  240
NGGTIELIYM QTYAPTTLAA ARDFWTLRYT TSLEDGSLVI CERSLTSSTG GPTGPPTSSF  300
VRAEMLPSGF LIRPCEGGGS IIHIVDHVDL DVWSVPEVLR PLYESSKILA QKMTIAALRH  360
IRQIAQETSG EIQYGGGRQP AVLRTFSQRL CRGFNDAVNG FADDGWSLMG SDGVEDVTIM  420
INSSPGKFLG SQYNTSMFPS FGGGVLCAKA SMLLQNVPPA LLVRFLREHR SEWADYGVDT  480
YSAACLKASP YAVPCARPGG FPSSQVILPL AHTVEHEEFL EVVRLEGHAF TPEDVALARD  540
MYLLQLCSGI DENAVGACAQ LVFAPIDESF ADDAPLLPSG FRVIPLDPKT VTLTCQSSAD  600
GAGATRTLDL ASALEVGPGS NRLAGDGDPS NYNLRSVLTI AFQFTFENHL RDNVAAMARQ  660
YVRSVVGSVQ RVAMAIAPSR LSSNMEPKAL PGSPEALTLA RWICRSYRIH TGEELLRVDS  720
QAGDALLKQL WHHSDAIMCC SLKTNASPVF TFANQAGLDM LETTLVALQD IMLDKILDEA  780
GRKILCSEFS KIMQQGFAYL PAGICVSSMG RPVSYEQAIA WKVLNDNDAN HCLTFMFVNW  840
SFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017979204.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X1
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A061G8J90.0A0A061G8J9_THECC; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1
STRINGEOY254960.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  4. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  5. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  6. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  7. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  8. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  9. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  10. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]