PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026853t2
Common NameTCM_026853
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 443aa    MW: 49011.6 Da    PI: 7.6425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026853t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-171462148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                      +g W++eEde+l+++++++G g+W+++++    + R++k+c++rw +yl
  Thecc1EG026853t2 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAAgLQRCGKSCRLRWINYL 62
                      678********************************************97 PP
2Myb_DNA-binding44.43.9e-1468111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Thecc1EG026853t2  68 RGAFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 111
                       89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-28665IPR009057Homeodomain-like
PROSITE profilePS5129418.114962IPR017930Myb domain
SuperFamilySSF466894.49E-2912109IPR009057Homeodomain-like
SMARTSM007178.7E-131364IPR001005SANT/Myb domain
PfamPF002498.0E-151462IPR001005SANT/Myb domain
CDDcd001679.46E-121762No hitNo description
PROSITE profilePS5129424.83363117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2566117IPR009057Homeodomain-like
SMARTSM007172.9E-1267115IPR001005SANT/Myb domain
PfamPF002494.7E-1368111IPR001005SANT/Myb domain
CDDcd001675.88E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAAGLQRC GKSCRLRWIN  60
YLRPDLKRGA FSQQEENLII ELHAVLGNRW SQIAAQLPGR TDNEIKNLWN SCIKKKLRRT  120
GIDPNTHKPL SEVENDNKEK LPTSNKASAG SNELNLGEVM DSKSPSTVME KYPLEVSSHS  180
KMNNSGNCRN NNVNVTSTPH TQEFLLDRFA TTHESNTTTS CRPSDLVSYF PFQKLDYAPN  240
IGLSVSQSTS LCFNSSSSSS EVISEFNSSL RQTVLPTMSS SIFQTPIRVK PSVSLPCDNP  300
SCDVNGVQNW EGSSYSNNAS SSNGSSGSVE LQSNSILFES NLFSWGLADC GKSGEGVPIR  360
SLEGDPDDIK WSEYLNSPFL LGTPMLNQTS QAMYNEVKPQ AQLITDGSSN TWPQNQHQQA  420
SRVSDMYAKD FQRLAVAFGQ TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976911.10.0PREDICTED: transcription factor MYB86
SwissprotQ8VZQ21e-122MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A061F4300.0A0A061F430_THECC; Myb domain protein 61, putative isoform 2
STRINGEOY117860.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-118myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]