PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG026851t4 | ||||||||
Common Name | TCM_026851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 731aa MW: 77790.4 Da PI: 5.8967 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.1 | 1.3e-17 | 470 | 517 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ +kK++Ka++L +A+eY+k Lq Thecc1EG026851t4 470 VHNLSERRRRDRINEKMRALQELIPNC----NKKVDKASMLDEAIEYLKTLQ 517 6**************************....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.02E-18 | 462 | 521 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-21 | 463 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-21 | 463 | 528 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.66 | 466 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-15 | 470 | 517 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-17 | 472 | 522 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
MPLSELYRMA RGKLDSSQDK NPSCSTDLSF VPENDFVELV LENGQILMQG QSSKARRIPA 60 CNSLPSHCLP SHTPKTRDKD TGNGGTNTKM GKFGTIDSVL SEIPMSVPSA EMSLNQDDEV 120 VPWLNYPVDQ SLQSEYSDFL PELSGVAVNE TSTHSNFASF DRRSQSIRDS CTVSLNNGAV 180 FEQGNPSKVP TPADGEARPR SGTSQLSTLP SQLCQTSSPF LRSRILENIG NSLGHTSTHH 240 AIGGDSIGVQ ASDGGLPGIK MQKQDQVAPC NNTVLMNFSH FSRPAALVKA SLQNISAIAS 300 IERIGSKEKG SAASISDPAD TTFIDSSIDL QKEKFSQCQP TIVLMKTDRK ESKAKSLDEP 360 VTAEPIDAIC EENTPKNVKN PSQVTGESAS KGLPDGDKTV EPVLAASSVC SGNSVERASD 420 DPVYNLKRKS RDNEESECPS EDAEEESVGV KKAVPARGGS GSKRSRAAEV HNLSERRRRD 480 RINEKMRALQ ELIPNCNKKV DKASMLDEAI EYLKTLQLQV QIMSMGAGLY MPPMMLPTGM 540 QHMHAAHMAH FSPMGVGLGM GMGFGMPLPD MNAGSSARPM VQVPPIHGAP FSGPGPTALQ 600 GMAGSNLQLF GLPGQGLPMS MPHTPLIPIS GGHLMKPAMG LSACGLVGPM DNMGSATASS 660 SKDPVQNINS QVAQNTNVNS SMNQTPSQCP TTNQSFEQPA AVQENGQASE ITGSVPFRSA 720 DGNEKVPDRS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 474 | 479 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007031278.2 | 0.0 | PREDICTED: transcription factor PIF3 | ||||
TrEMBL | A0A061F4F9 | 0.0 | A0A061F4F9_THECC; Phytochrome interacting factor 3, putative isoform 4 | ||||
STRING | EOY11781 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-68 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG026851t4 |
Entrez Gene | 18600647 |
Publications ? help Back to Top | |||
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