PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026851t2
Common NameTCM_026851
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 732aa    MW: 78521.9 Da    PI: 6.7508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026851t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16470516455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Thecc1EG026851t2 470 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 516
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.59E-17462520No hitNo description
SuperFamilySSF474591.57E-20463527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-20463524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349466515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13470516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MPLSELYRMA RGKLDSSQDK NPSCSTDLSF VPENDFVELV LENGQILMQG QSSKARRIPA  60
CNSLPSHCLP SHTPKTRDKD TGNGGTNTKM GKFGTIDSVL SEIPMSVPSA EMSLNQDDEV  120
VPWLNYPVDQ SLQSEYSDFL PELSGVAVNE TSTHSNFASF DRRSQSIRDS CTVSLNNGAV  180
FEQGNPSKVP TPADGEARPR SGTSQLSTLP SQLCQTSSPF LRSRILENIG NSLGHTSTHH  240
AIGGDSIGVQ ASDGGLPGIK MQKQDQVAPC NNTVLMNFSH FSRPAALVKA SLQNISAIAS  300
IERIGSKEKG SAASISDPAD TTFIDSSIDL QKEKFSQCQP TIVLMKTDRK ESKAKSLDEP  360
VTAEPIDAIC EENTPKNVKN PSQVTGESAS KGLPDGDKTV EPVLAASSVC SGNSVERASD  420
DPVYNLKRKS RDNEESECPS EDAEEESVGV KKAVPARGGS GSKRSRAAEV HNLSERRRRD  480
RINEKMRALQ ELIPNCNKVD KASMLDEAIE YLKTLQLQVQ IMSMGAGLYM PPMMLPTGMQ  540
HMHAAHMAHF SPMGVGLGMG MGFGMPLPDM NAGSSARPMV QVPPIHGAPF SGPGPTALQG  600
MAGSNLQLFG LPGQGLPMSM PHTPLIPISG GHLMKPAMGL SACGLVGPMD NMGSATASSS  660
KDPVQNINSQ VAQNTNVNSS MNQTPSSVQQ QIKVLNSQLQ CKRMVKHQKL LVVYLLDQPM  720
EMKKYLIGHN W*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1474479ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031278.20.0PREDICTED: transcription factor PIF3
TrEMBLA0A061F4270.0A0A061F427_THECC; Phytochrome interacting factor 3, putative isoform 2
STRINGEOY117810.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-70phytochrome interacting factor 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]