PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026841t1
Common NameTCM_026841
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 299aa    MW: 34405.3 Da    PI: 6.038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026841t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033161185123
                       EEETTTTEEESSHHHHHHHHHH..T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                       + C+ C+k ++  +++++H+++  H
  Thecc1EG026841t1 161 FYCELCNKQYKLAMEFEVHLSSydH 185
                       79*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004432.2E-1764109IPR000467G-patch domain
PROSITE profilePS5017416.57966111IPR000467G-patch domain
PfamPF015856.6E-1667107IPR000467G-patch domain
PfamPF121712.0E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDYRRYNSAQ ETNIRDKQQQ QDDLAYQDSL IEDLAEDFRL PINHKPTENV DLENVEQATL  60
DTRLNSSNIG FRLLQKMGWK GKGLGKDEQG ITEPIRSGIR DPKLGIGKQE EDDFFTAEEN  120
IQRRKLDIEV EETEEHAKKR EVLAEREQKI QTEVKEIRKV FYCELCNKQY KLAMEFEVHL  180
SSYDHNHRKR FKEMREMHGG SSRDDRQKRE QQRQEKEMAK FAQMAGARKQ QQELPEESGP  240
AIASAPVTAT ALADQDQRKA LKFGFSSKTS TSKNAFGNAA KKPKFPVASV FGNDSDDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031270.20.0PREDICTED: G patch domain-containing protein 8
RefseqXP_017977347.10.0PREDICTED: G patch domain-containing protein 8
TrEMBLA0A061F5350.0A0A061F535_THECC; D111/G-patch domain-containing protein
STRINGEOY117720.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1266756
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]