PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026732t1
Common NameTCM_026732
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 193aa    MW: 21173.4 Da    PI: 10.362
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026732t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-192660135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  Thecc1EG026732t1 26 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 60
                      ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-141860No hitNo description
SMARTSM004017.3E-162071IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.5052056IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-162460IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.19E-132575No hitNo description
PfamPF003201.2E-172660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGVMDLREKK SLSEVVMMSE NNKKFCTDCK TTKTPLWRGG PAGPKSLCNA CGIRYRKKRR  60
AMLGLNKGPE KKKERSQSSH SSSTTTTTSS ASVATTNVGD KKPSGQLNGL SESVKMRLYA  120
LGSEVFLQRS SSSSLLSGVV KKQRCQRRRK LGEEEQAAFS LMALSCGSVF FSPLFLSEMQ  180
MPFDLDYCSL EN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976332.13e-97PREDICTED: GATA transcription factor 15
TrEMBLA0A061F4J31e-137A0A061F4J3_THECC; GATA transcription factor 15, putative
STRINGEOY115971e-138(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16911712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-21GATA transcription factor 15
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]