PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026686t1

Common Name

TCM_026686

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 315aa MW: 34221.7 Da PI: 10.1485

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026686t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs++ L H++ H Thecc1EG026686t1 160 FTCGFCKKEFSTSQALGGHQNAH 182 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.9E-5	146	186	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.43E-6	157	187	No hit	No description
PROSITE profile	PS50157	11.406	160	187	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	162	182	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MLSATMRYST IISKIHLQIN PSINRTSSVS NLLQQTKPVF FLQRAKHQSK AAMETLCGKP 60 CSSDTSSISA ASGETQNKGG GIDGNMMAKL KEKVVVVQES HDHQSNQARS GLHLSLGAKF 120 SGDEMIHGSE VELKLSSMGS SQASKQQQQQ QQTKSKARAF TCGFCKKEFS TSQALGGHQN 180 AHKQERAIAK RRKEMDSGAL GHRQYPYYSY SSLSQASLYG SFNRALGTRM ESMIHKPAPA 240 YPWTTLGCRF GHGGIMMESF QAPKSSTLPT MAAAASSIAA KKPTSSRDFL SKMDLSESDN 300 RQDDDPGLDL SLRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021283267.1	0.0	LOW QUALITY PROTEIN: zinc finger protein GIS-like
TrEMBL	A0A061F4D1	0.0	A0A061F4D1_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRING	EOY11547	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	4e-24	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG026686t1
Entrez Gene	18600503

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]