PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026632t2

Common Name

TCM_026632

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 478aa MW: 52329.9 Da PI: 9.8063

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026632t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Thecc1EG026632t2 34 FVCEICKKGFQRDQNLQLHRRGH 56 89*******************88 PP
2	zf-C2H2	12.2	0.00056	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Thecc1EG026632t2 110 WKCDKCSKKYAVQSDWKAHSKTC 132 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.81E-6	33	56	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.4E-5	33	56	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.637	34	56	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.039	34	56	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	75	105	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.7E-4	98	131	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.81E-6	105	130	No hit	No description
SMART	SM00355	150	110	130	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MNNIMFFNSQ RLFPNPNAEV IALSPKTLLA TNRFVCEICK KGFQRDQNLQ LHRRGHNLPW 60 KLRQRTSTEI RKRVYVCPEP SCVHHNPARA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA 120 VQSDWKAHSK TCGTKEYKCD CGTIFSRRDS FITHRAFCDA LSEENNKANQ GLVPNVGSNL 180 QAQVPELIPA IPINNNPNTS AMNISDPFSH DTKSPLQPLS MAGSMFSNNP GNLFSGAKSN 240 VSNPSSSCLQ LNANNSSTLF EGNGHLFSGS ASMSATALLQ KAAQMGATAT TGSLNSPLMG 300 KSFTTSMAPP SFVSMQTPQS NQPQMLGADA GFTNQFMQKS QEEIRSDQFF NANGGVDHQS 360 SAVNNMAMFS GVFDQNNALL KSIENDQRRA SSNSGLSTPR SGGANPSGLS GFSGDMMTVD 420 FLGIGGSRPR NLLEKQHHHH HQPQQDHLEF GGFAQARLQG LSHFQQHAAV EKPMWKV*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MNNIMFFNSQ RLFPNPNAEV IALSPKTLLA TNRFVCEICK KGFQRDQNLQ LHRRGHNLPW  60
KLRQRTSTEI RKRVYVCPEP SCVHHNPARA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA  120
VQSDWKAHSK TCGTKEYKCD CGTIFSRRDS FITHRAFCDA LSEENNKANQ GLVPNVGSNL  180
QAQVPELIPA IPINNNPNTS AMNISDPFSH DTKSPLQPLS MAGSMFSNNP GNLFSGAKSN  240
VSNPSSSCLQ LNANNSSTLF EGNGHLFSGS ASMSATALLQ KAAQMGATAT TGSLNSPLMG  300
KSFTTSMAPP SFVSMQTPQS NQPQMLGADA GFTNQFMQKS QEEIRSDQFF NANGGVDHQS  360
SAVNNMAMFS GVFDQNNALL KSIENDQRRA SSNSGLSTPR SGGANPSGLS GFSGDMMTVD  420
FLGIGGSRPR NLLEKQHHHH HQPQQDHLEF GGFAQARLQG LSHFQQHAAV EKPMWKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	106	167	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-33	106	167	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976652.1	0.0	PREDICTED: protein indeterminate-domain 2
Swissprot	Q9SCQ6	1e-107	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A061F298	0.0	A0A061F298_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative isoform 2
STRING	EOY11464	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-98	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Thecc1EG026632t2
Entrez Gene	18600454

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]