PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026632t1

Common Name

TCM_026632

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 542aa MW: 58915.7 Da PI: 9.3706

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026632t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Thecc1EG026632t1 98 FVCEICKKGFQRDQNLQLHRRGH 120 89*******************88 PP
2	zf-C2H2	12	0.00065	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Thecc1EG026632t1 174 WKCDKCSKKYAVQSDWKAHSKTC 196 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.21E-6	97	120	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-4	97	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.039	98	120	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	98	120	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	139	169	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.5E-4	162	195	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.21E-6	169	194	No hit	No description
SMART	SM00355	150	174	194	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MSNITAGDGG SLSSGNTAGE EVHQQQQQQQ QQQQQQEQVN HFHGLNSLPP STNSNGSTTT 60 PQEQPPPAKK KRNLPGTPDP NAEVIALSPK TLLATNRFVC EICKKGFQRD QNLQLHRRGH 120 NLPWKLRQRT STEIRKRVYV CPEPSCVHHN PARALGDLTG IKKHFCRKHG EKKWKCDKCS 180 KKYAVQSDWK AHSKTCGTKE YKCDCGTIFS RRDSFITHRA FCDALSEENN KANQGLVPNV 240 GSNLQAQVPE LIPAIPINNN PNTSAMNISD PFSHDTKSPL QPLSMAGSMF SNNPGNLFSG 300 AKSNVSNPSS SCLQLNANNS STLFEGNGHL FSGSASMSAT ALLQKAAQMG ATATTGSLNS 360 PLMGKSFTTS MAPPSFVSMQ TPQSNQPQML GADAGFTNQF MQKSQEEIRS DQFFNANGGV 420 DHQSSAVNNM AMFSGVFDQN NALLKSIEND QRRASSNSGL STPRSGGANP SGLSGFSGDM 480 MTVDFLGIGG SRPRNLLEKQ HHHHHQPQQD HLEFGGFAQA RLQGLSHFQQ HAAVEKPMWK 540 V*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MSNITAGDGG SLSSGNTAGE EVHQQQQQQQ QQQQQQEQVN HFHGLNSLPP STNSNGSTTT  60
PQEQPPPAKK KRNLPGTPDP NAEVIALSPK TLLATNRFVC EICKKGFQRD QNLQLHRRGH  120
NLPWKLRQRT STEIRKRVYV CPEPSCVHHN PARALGDLTG IKKHFCRKHG EKKWKCDKCS  180
KKYAVQSDWK AHSKTCGTKE YKCDCGTIFS RRDSFITHRA FCDALSEENN KANQGLVPNV  240
GSNLQAQVPE LIPAIPINNN PNTSAMNISD PFSHDTKSPL QPLSMAGSMF SNNPGNLFSG  300
AKSNVSNPSS SCLQLNANNS STLFEGNGHL FSGSASMSAT ALLQKAAQMG ATATTGSLNS  360
PLMGKSFTTS MAPPSFVSMQ TPQSNQPQML GADAGFTNQF MQKSQEEIRS DQFFNANGGV  420
DHQSSAVNNM AMFSGVFDQN NALLKSIEND QRRASSNSGL STPRSGGANP SGLSGFSGDM  480
MTVDFLGIGG SRPRNLLEKQ HHHHHQPQQD HLEFGGFAQA RLQGLSHFQQ HAAVEKPMWK  540
V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-33	170	231	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-33	170	231	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976652.1	0.0	PREDICTED: protein indeterminate-domain 2
Swissprot	Q9SCQ6	1e-114	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A061FAD6	0.0	A0A061FAD6_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative isoform 1
STRING	EOY11464	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19649	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-104	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Thecc1EG026632t1
Entrez Gene	18600454

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]