PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026624t4

Common Name

TCM_026624

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 983aa MW: 109920 Da PI: 9.613

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026624t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	7e-10	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Thecc1EG026624t4 45 QWSKEEIERFYKAYREYGKD-WKKVAAAVH-NRSTEMV 80 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.272	41	94	IPR017884	SANT domain
SuperFamily	SSF46689	1.05E-10	41	89	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-5	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-6	44	80	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-8	45	82	IPR001005	SANT/Myb domain
CDD	cd00167	4.24E-6	46	80	No hit	No description
SMART	SM01135	5.5E-58	652	753	IPR033471	DIRP domain
Pfam	PF06584	2.0E-32	652	752	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence Send to blast
MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KNKPKKKLAD KLGSQWSKEE IERFYKAYRE 60 YGKDWKKVAA AVHNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLRGSDCE 120 RESNEPSEIP QKAQKRKRAK VHLGTSKEGV VQPQSIASSQ GCLSLLKRAG LNGIHPHAVR 180 KRTPRVPVSY SYRRNDTESY IPPNKRVKKS DADDNDAEHV AALTLTGALQ RGGSPQVSQT 240 PYKRAECRRS SPVQSYDRTS PQPETTKAKL DDSSYECWME GRPRGTEPVI GTHARDADPL 300 MDMEVVGTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTEERIRGS TLKGKVDMEI 360 TSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SESSVKLKEN 420 RITLESVDKS SAPEAASTSH HRDNIKHLRP NEKVLDSITG AEEATTRKLK VGRNSAMDDN 480 VVSEAKQKPE PTNNSWKRKR KSFSSKISNA EASMDSHLQQ SFDNEDMGEE DNKYLTKGKC 540 GAQSSVQSRQ WKSFRVSEDS STNDDPKMAG IDSVVLTSQV PAPNPVSVPP KHQSRRKMNL 600 RRAFLSTDRS SSKCTLKNQP IKQSVTQDRL KEQLSSCLSS NLARRWCSFE WFYSAIDYAW 660 FAKREFVEYL NHVGLGHVPR LTRVEWGVIR SSLGKPRRFS ERFLHEEREK LKHYRESVRQ 720 HYSQLRVGAR EGLPTDLAYP LSVGQQVIAI HPKTREAHDG KVLTVDHDRC RVQFDSPELG 780 VEFVMDIDCM PLNPLENMPE ALRRQNLAFD KFSVTPKPSQ VNSHSDFGGS TVFTSSGHLE 840 NGTSPVNMSA NQIKVDANRN ILHAEAAVPY VVSAHQAAYG QPLTMAHIKG RETDTRAMSE 900 LNGASDKNEE QGPSELIASC VATLLMIQTC TERQYPPADV AQIIDSAVTS LHPCFPQNLP 960 IYREIQMCMG RIKTQILALI PT*

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence Send to blast

MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KNKPKKKLAD KLGSQWSKEE IERFYKAYRE  60
YGKDWKKVAA AVHNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLRGSDCE  120
RESNEPSEIP QKAQKRKRAK VHLGTSKEGV VQPQSIASSQ GCLSLLKRAG LNGIHPHAVR  180
KRTPRVPVSY SYRRNDTESY IPPNKRVKKS DADDNDAEHV AALTLTGALQ RGGSPQVSQT  240
PYKRAECRRS SPVQSYDRTS PQPETTKAKL DDSSYECWME GRPRGTEPVI GTHARDADPL  300
MDMEVVGTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTEERIRGS TLKGKVDMEI  360
TSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SESSVKLKEN  420
RITLESVDKS SAPEAASTSH HRDNIKHLRP NEKVLDSITG AEEATTRKLK VGRNSAMDDN  480
VVSEAKQKPE PTNNSWKRKR KSFSSKISNA EASMDSHLQQ SFDNEDMGEE DNKYLTKGKC  540
GAQSSVQSRQ WKSFRVSEDS STNDDPKMAG IDSVVLTSQV PAPNPVSVPP KHQSRRKMNL  600
RRAFLSTDRS SSKCTLKNQP IKQSVTQDRL KEQLSSCLSS NLARRWCSFE WFYSAIDYAW  660
FAKREFVEYL NHVGLGHVPR LTRVEWGVIR SSLGKPRRFS ERFLHEEREK LKHYRESVRQ  720
HYSQLRVGAR EGLPTDLAYP LSVGQQVIAI HPKTREAHDG KVLTVDHDRC RVQFDSPELG  780
VEFVMDIDCM PLNPLENMPE ALRRQNLAFD KFSVTPKPSQ VNSHSDFGGS TVFTSSGHLE  840
NGTSPVNMSA NQIKVDANRN ILHAEAAVPY VVSAHQAAYG QPLTMAHIKG RETDTRAMSE  900
LNGASDKNEE QGPSELIASC VATLLMIQTC TERQYPPADV AQIIDSAVTS LHPCFPQNLP  960
IYREIQMCMG RIKTQILALI PT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976648.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X2
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A061FAC8	0.0	A0A061FAC8_THECC; DIRP,Myb-like DNA-binding domain, putative isoform 4
STRING	EOY11452	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-175	DNA binding

Link Out ? help Back to Top
Phytozome	Thecc1EG026624t4
Entrez Gene	18600446

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]