PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG026624t3 | ||||||||
Common Name | TCM_026624 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 1168aa MW: 130243 Da PI: 9.4682 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.6e-10 | 45 | 80 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Thecc1EG026624t3 45 QWSKEEIERFYKAYREYGKD-WKKVAAAVH-NRSTEMV 80 6*****************99.*********.**98876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.272 | 41 | 94 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.27E-10 | 41 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-5 | 42 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-6 | 44 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-8 | 45 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.61E-6 | 46 | 80 | No hit | No description |
Pfam | PF06584 | 2.6E-32 | 652 | 752 | IPR033471 | DIRP domain |
SMART | SM01135 | 5.5E-58 | 652 | 753 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1168 aa Download sequence Send to blast |
MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KNKPKKKLAD KLGSQWSKEE IERFYKAYRE 60 YGKDWKKVAA AVHNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLRGSDCE 120 RESNEPSEIP QKAQKRKRAK VHLGTSKEGV VQPQSIASSQ GCLSLLKRAG LNGIHPHAVR 180 KRTPRVPVSY SYRRNDTESY IPPNKRVKKS DADDNDAEHV AALTLTGALQ RGGSPQVSQT 240 PYKRAECRRS SPVQSYDRTS PQPETTKAKL DDSSYECWME GRPRGTEPVI GTHARDADPL 300 MDMEVVGTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTEERIRGS TLKGKVDMEI 360 TSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SESSVKLKEN 420 RITLESVDKS SAPEAASTSH HRDNIKHLRP NEKVLDSITG AEEATTRKLK VGRNSAMDDN 480 VVSEAKQKPE PTNNSWKRKR KSFSSKISNA EASMDSHLQQ SFDNEDMGEE DNKYLTKGKC 540 GAQSSVQSRQ WKSFRVSEDS STNDDPKMAG IDSVVLTSQV PAPNPVSVPP KHQSRRKMNL 600 RRAFLSTDRS SSKCTLKNQP IKQSVTQDRL KEQLSSCLSS NLARRWCSFE WFYSAIDYAW 660 FAKREFVEYL NHVGLGHVPR LTRVEWGVIR SSLGKPRRFS ERFLHEEREK LKHYRESVRQ 720 HYSQLRVGAR EGLPTDLAYP LSVGQQVIAI HPKTREAHDG KVLTVDHDRC RVQFDSPELG 780 VEFVMDIDCM PLNPLENMPE ALRRQNLAFD KFSVTPKPSQ VNSHSDFGGS TVFTSSGHLE 840 NGTSPVNMSA NQIKVDANRN ILHAEAAVPY VVSAHQAAYG QPLTMAHIKG RETDTRAMSE 900 LNGALDKKEA LLMELRNTNN DISENQNGES CLKDSEPFKK HIATASSALV NLRQRNAYPA 960 NPLSPWQKPP TNSNFFGGLK SYVDSSLVSP ESGSGVGEIV QGSRLKAHAM VDAAMKAMSS 1020 MKEGEDAFMR IGEALDSLDK RQFTYDIRMP VIKSREQENG SMDYRNHLVS CTSKPVAAGW 1080 ATNPKSQEAS DKNEEQGPSE LIASCVATLL MIQTCTERQY PPADVAQIID SAVTSLHPCF 1140 PQNLPIYREI QMCMGRIKTQ ILALIPT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007030951.2 | 0.0 | PREDICTED: protein ALWAYS EARLY 2 isoform X1 | ||||
Swissprot | Q6A333 | 0.0 | ALY2_ARATH; Protein ALWAYS EARLY 2 | ||||
TrEMBL | A0A061F3G2 | 0.0 | A0A061F3G2_THECC; DIRP,Myb-like DNA-binding domain, putative isoform 3 | ||||
STRING | EOY11452 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG026624t3 |
Entrez Gene | 18600446 |
Publications ? help Back to Top | |||
---|---|---|---|
|