PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026624t1

Common Name

TCM_026624

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 1169aa MW: 130677 Da PI: 9.134

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026624t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.5	8.6e-10	19	54	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Thecc1EG026624t1 19 QWSKEEIERFYKAYREYGKD-WKKVAAAVH-NRSTEMV 54 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-11	14	63	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.272	15	68	IPR017884	SANT domain
SMART	SM00717	6.6E-5	16	64	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-6	18	54	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	19	56	IPR001005	SANT/Myb domain
CDD	cd00167	4.84E-6	20	54	No hit	No description
SMART	SM01135	5.5E-58	653	754	IPR033471	DIRP domain
Pfam	PF06584	2.6E-32	653	753	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1169 aa Download sequence Send to blast
MDCCIYAMKK KLADKLGSQW SKEEIERFYK AYREYGKDWK KVAAAVHNRS TEMVEALYLM 60 NRAYLSLPDG TASVIGLIAM MTDHYSVLRG SDCERESNEP SEIPQKAQKR KRAKVHLGTS 120 KEGVVQPQSI ASSQGCLSLL KRAGLNGIHP HAVRKRTPRV PVSYSYRRND TESYIPPNKR 180 VKKSDADDND AEHVAALTLT GALQRGGSPQ VSQTPYKRAE CRRSSPVQSY DRTSPQPETT 240 KAKLDDSSYE CWMEGRPRGT EPVIGTHARD ADPLMDMEVV GTIEGHRKGK KFYRKKMKVE 300 ETKNNLSDDG GEACSGTEER IRGSTLKGKV DMEITSAKSE QLSPWSQRKR SNKKLVFGGL 360 NLRSSIEFDS AYKLNIVFLF FFRYVDESSS IDALLTLANL STSMLPTSIM ESESSVKLKE 420 NRITLESVDK SSAPEAASTS HHRDNIKHLR PNEKVLDSIT GAEEATTRKL KVGRNSAMDD 480 NVVSEAKQKP EPTNNSWKRK RKSFSSKISN AEASMDSHLQ QSFDNEDMGE EDNKYLTKGK 540 CGAQSSVQSR QWKSFRVSED SSTNDDPKMA GIDSVVLTSQ VPAPNPVSVP PKHQSRRKMN 600 LRRAFLSTDR SSSKCTLKNQ PIKQSVTQDR LKEQLSSCLS SNLARRWCSF EWFYSAIDYA 660 WFAKREFVEY LNHVGLGHVP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKHYRESVR 720 QHYSQLRVGA REGLPTDLAY PLSVGQQVIA IHPKTREAHD GKVLTVDHDR CRVQFDSPEL 780 GVEFVMDIDC MPLNPLENMP EALRRQNLAF DKFSVTPKPS QVNSHSDFGG STVFTSSGHL 840 ENGTSPVNMS ANQIKVDANR NILHAEAAVP YVVSAHQAAY GQPLTMAHIK GRETDTRAMS 900 ELNGALDKKE ALLMELRNTN NDISENQNGE SCLKDSEPFK KHIATASSAL VNLRQRNAYP 960 ANPLSPWQKP PTNSNFFGGL KSYVDSSLVS PESGSGVGEI VQGSRLKAHA MVDAAMKAMS 1020 SMKEGEDAFM RIGEALDSLD KRQFTYDIRM PVIKSREQEN GSMDYRNHLV SCTSKPVAAG 1080 WATNPKSQEA SDKNEEQGPS ELIASCVATL LMIQTCTERQ YPPADVAQII DSAVTSLHPC 1140 FPQNLPIYRE IQMCMGRIKT QILALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1169 aa Download sequence Send to blast

MDCCIYAMKK KLADKLGSQW SKEEIERFYK AYREYGKDWK KVAAAVHNRS TEMVEALYLM  60
NRAYLSLPDG TASVIGLIAM MTDHYSVLRG SDCERESNEP SEIPQKAQKR KRAKVHLGTS  120
KEGVVQPQSI ASSQGCLSLL KRAGLNGIHP HAVRKRTPRV PVSYSYRRND TESYIPPNKR  180
VKKSDADDND AEHVAALTLT GALQRGGSPQ VSQTPYKRAE CRRSSPVQSY DRTSPQPETT  240
KAKLDDSSYE CWMEGRPRGT EPVIGTHARD ADPLMDMEVV GTIEGHRKGK KFYRKKMKVE  300
ETKNNLSDDG GEACSGTEER IRGSTLKGKV DMEITSAKSE QLSPWSQRKR SNKKLVFGGL  360
NLRSSIEFDS AYKLNIVFLF FFRYVDESSS IDALLTLANL STSMLPTSIM ESESSVKLKE  420
NRITLESVDK SSAPEAASTS HHRDNIKHLR PNEKVLDSIT GAEEATTRKL KVGRNSAMDD  480
NVVSEAKQKP EPTNNSWKRK RKSFSSKISN AEASMDSHLQ QSFDNEDMGE EDNKYLTKGK  540
CGAQSSVQSR QWKSFRVSED SSTNDDPKMA GIDSVVLTSQ VPAPNPVSVP PKHQSRRKMN  600
LRRAFLSTDR SSSKCTLKNQ PIKQSVTQDR LKEQLSSCLS SNLARRWCSF EWFYSAIDYA  660
WFAKREFVEY LNHVGLGHVP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKHYRESVR  720
QHYSQLRVGA REGLPTDLAY PLSVGQQVIA IHPKTREAHD GKVLTVDHDR CRVQFDSPEL  780
GVEFVMDIDC MPLNPLENMP EALRRQNLAF DKFSVTPKPS QVNSHSDFGG STVFTSSGHL  840
ENGTSPVNMS ANQIKVDANR NILHAEAAVP YVVSAHQAAY GQPLTMAHIK GRETDTRAMS  900
ELNGALDKKE ALLMELRNTN NDISENQNGE SCLKDSEPFK KHIATASSAL VNLRQRNAYP  960
ANPLSPWQKP PTNSNFFGGL KSYVDSSLVS PESGSGVGEI VQGSRLKAHA MVDAAMKAMS  1020
SMKEGEDAFM RIGEALDSLD KRQFTYDIRM PVIKSREQEN GSMDYRNHLV SCTSKPVAAG  1080
WATNPKSQEA SDKNEEQGPS ELIASCVATL LMIQTCTERQ YPPADVAQII DSAVTSLHPC  1140
FPQNLPIYRE IQMCMGRIKT QILALIPT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976648.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X2
TrEMBL	A0A061F320	0.0	A0A061F320_THECC; DIRP,Myb-like DNA-binding domain, putative isoform 1
STRING	EOY11452	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Thecc1EG026624t1
Entrez Gene	18600446

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]