PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026600t2
Common NameTCM_026600
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family RAV
Protein Properties Length: 340aa    MW: 38682.6 Da    PI: 8.6365
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026600t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.12.8e-104390154
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                      s++kGV + k +g+W A+++       + +r++lg+f ++ +Aa a++ a+ k++
  Thecc1EG026600t2 43 SRFKGVIRQK-NGQWGAQLYA------NhTRIWLGTFKSETDAAMAYDSAAIKFR 90
                      789***6566.9******887......34**********99**********9987 PP
2B384.21.2e-26166261189
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+ltpsdv+k++rlv+pkk+a ++      +g+k ++ +l+++d+  r W+++++y+++s+++v+t+GW++F k+++Lk++D++ F++ ++
  Thecc1EG026600t2 166 FQKELTPSDVGKLNRLVIPKKYAVKFfppiegSGSKGSDAELIFYDKFMRLWKFRYCYWNSSQSFVFTRGWNRFLKEKELKANDVISFYVCES 258
                       99******************************8888999**************************************************7643 PP

                       .SE CS
                B3  88 .se 89 
                        +e
  Thecc1EG026600t2 259 rKE 261
                       233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-1443100IPR016177DNA-binding domain
CDDcd000181.21E-204399No hitNo description
PfamPF008472.6E-64390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1644100IPR001471AP2/ERF domain
SMARTSM003803.0E-2044105IPR001471AP2/ERF domain
PROSITE profilePS5103217.1354499IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.3E-31161264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-27164259IPR015300DNA-binding pseudobarrel domain
CDDcd100175.55E-25165254No hitNo description
SMARTSM010192.2E-21166273IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351166273IPR003340B3 DNA binding domain
PfamPF023621.2E-23166261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDEEMLSVIS SGEGNATSEV SDSISTSHPA RKRQRSGSNG TSSRFKGVIR QKNGQWGAQL  60
YANHTRIWLG TFKSETDAAM AYDSAAIKFR TGDTHRNFPL TDITVEEPKF QSNYSAEAVL  120
SMIRDGSYQY KFMDFLKNSF RNGKVEIDLN SVRKYSGKGL SCKQLFQKEL TPSDVGKLNR  180
LVIPKKYAVK FFPPIEGSGS KGSDAELIFY DKFMRLWKFR YCYWNSSQSF VFTRGWNRFL  240
KEKELKANDV ISFYVCESRK EQEVQRFCMI DVNNYGNDDA LAEAANLQVE REVDLQLRLG  300
HCYAFDGGKQ VKQEQELMAV DATEDVNTTG FKLFGMQIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2816226210109DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030917.20.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_017976731.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_017976732.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P52e-97RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A061F3C80.0A0A061F3C8_THECC; AP2/B3 transcription factor family protein, putative isoform 1
TrEMBLA0A061FA900.0A0A061FA90_THECC; AP2 domain-containing transcription factor, putative isoform 2
STRINGEOY114180.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-99RAV family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]