PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026599t1

Common Name

TCM_026599

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 336aa MW: 37424.6 Da PI: 6.3766

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026599t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.6e-13	135	186	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Thecc1EG026599t1 135 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 186 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.9E-13	133	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.94E-13	133	190	No hit	No description
PROSITE profile	PS50888	15.402	134	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.11E-16	134	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	135	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-9	140	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MALDAVVFPQ DLFGYNSKDL YSLLGGNWSY DFGLEKQEER VCFDHHFPDN QTPETNSFLH 60 GDWSNSSSPP SMVPPHFGDH HRLHHPNSSS DATNNANGST NGGEPSALDT STTTSTRAKR 120 RRSKSRKNKE EIENQRMTHI AVERNRRKQM NEYLSVLRSL MPESYVQRGD QASIIGGAIN 180 FVKELEHRLQ FLSAQNEVKE RSDGGSSSSC SAFAEFFTFP QYSTSSTRSD SSISMNETMV 240 ETQSAIADIE VTMVESHANL KIRAKRRPAQ LLKVVSGLNS MRLSILHLNV TTVDQTVLYS 300 LSVKVEDDCK LTSVDDIATA VNQLLGRIQE DAMLN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	146	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976003.1	0.0	PREDICTED: transcription factor bHLH94
TrEMBL	A0A061F3Z6	0.0	A0A061F3Z6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY11417	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1116	27	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-74	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG026599t1
Entrez Gene	18600423

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]