PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG026585t7 | ||||||||
Common Name | TCM_026585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YC | ||||||||
Protein Properties | Length: 257aa MW: 28334 Da PI: 6.2277 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.9 | 9.8e-56 | 76 | 179 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifd Thecc1EG026585t7 76 QLQAFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFD 168 89******99999******************************************************************************** PP NF-YC 91 flvdivprdel 101 flvdivpr++l Thecc1EG026585t7 169 FLVDIVPREDL 179 ********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.54E-33 | 71 | 170 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-21 | 98 | 161 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-37 | 99 | 176 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDQQGHGQPP AMGMIGSGAQ VPYGSNPYQN QVAGGPNPGS VVTSVGASQP TGAQLAQHQL 60 AYQQIHHQQQ QQLQQQLQAF WANQYQEIEK VTDFKNHSLP LARIKKIMKA DEDVRMISAE 120 APVIFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREDLK 180 DEVLASIPRG TMPVGGPADA LSYYMPAQHA SQVGTPGMIM GKPVMDPAMY AQQSHPYMAQ 240 QMWPSGPEQQ QSSSDH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-62 | 84 | 176 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 154 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007030880.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_007030881.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_007030882.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_007030884.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_007030888.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_007030889.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_017977847.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q8L4B2 | 9e-90 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A061FA52 | 0.0 | A0A061FA52_THECC; Nuclear transcription factor Y subunit C-9 isoform 1 | ||||
STRING | EOY11389 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 6e-86 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG026585t7 |
Entrez Gene | 18600409 |