PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG026448t2 | ||||||||
Common Name | TCM_026448 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 415aa MW: 45789.4 Da PI: 6.9536 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.1 | 9.6e-34 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Thecc1EG026448t2 47 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 101 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.014 | 44 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-31 | 45 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.78E-17 | 46 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-23 | 47 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.9E-10 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.3E-24 | 148 | 194 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence Send to blast |
MYHHHHQHQG KNIHPSSRMP IPPERHLFLQ GGNGPGDSGL VLSTDAKPRL KWTPDLHERF 60 IEAVNQLGGA DKATPKTVMK LMGIPGLTLY HLKSHLQKYR LSKNLHGQAN NGSNKIGAVA 120 MAGDRMSEAN GTHVNNLSIG PQANNGLQIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ 180 GKYLQAVLEK AQETLGRQNL GSVGLEAAKV QLSELVSKVS NQCLNSAFSD LKDLQGLCPQ 240 QTQATPPTDC SMDSCLTSCE GSQKEQEIHN NGMCLRPYNT SGALLEQREI AEDPLLPQTE 300 LKSFEDIKEN KMFLSSLGKD AERRMFFADR SSSDLSMSVG LQGEKGNGGN SSSFSEAKFK 360 GRNEDDSFLD RGNKRADEVN RLPYFATKLD LNVHEENDAA SSCKQFDLNG LSWN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-21 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-21 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-21 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-21 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007030697.1 | 0.0 | PREDICTED: myb-related protein 2 | ||||
Refseq | XP_007030698.1 | 0.0 | PREDICTED: myb-related protein 2 | ||||
Swissprot | Q9SQQ9 | 1e-165 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A061F2V1 | 0.0 | A0A061F2V1_THECC; Homeodomain-like superfamily protein isoform 1 | ||||
TrEMBL | A0A061F9P8 | 0.0 | A0A061F9P8_THECC; Homeodomain-like superfamily protein isoform 2 | ||||
STRING | EOY11198 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-165 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG026448t2 |
Entrez Gene | 18600280 |
Publications ? help Back to Top | |||
---|---|---|---|
|