PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026448t1
Common NameTCM_026448
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 479aa    MW: 53286.8 Da    PI: 7.6757
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026448t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.81.2e-33111165155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Thecc1EG026448t1 111 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 165
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.014108168IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-31109166IPR009057Homeodomain-like
SuperFamilySSF466891.08E-16110166IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-23111166IPR006447Myb domain, plants
PfamPF002495.9E-10113164IPR001005SANT/Myb domain
PfamPF143794.0E-24212258IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MYSLFHSLPS NNLQGRASFT PPFYFSFFLY VSNSKASSFT VNIDNPKKRL QQQGEEQSSF  60
WRQKMYHHHH QHQGKNIHPS SRMPIPPERH LFLQGGNGPG DSGLVLSTDA KPRLKWTPDL  120
HERFIEAVNQ LGGADKATPK TVMKLMGIPG LTLYHLKSHL QKYRLSKNLH GQANNGSNKI  180
GAVAMAGDRM SEANGTHVNN LSIGPQANNG LQIGEALQMQ IEVQRRLHEQ LEVQRHLQLR  240
IEAQGKYLQA VLEKAQETLG RQNLGSVGLE AAKVQLSELV SKVSNQCLNS AFSDLKDLQG  300
LCPQQTQATP PTDCSMDSCL TSCEGSQKEQ EIHNNGMCLR PYNTSGALLE QREIAEDPLL  360
PQTELKSFED IKENKMFLSS LGKDAERRMF FADRSSSDLS MSVGLQGEKG NGGNSSSFSE  420
AKFKGRNEDD SFLDRGNKRA DEVNRLPYFA TKLDLNVHEE NDAASSCKQF DLNGLSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-21110167158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-21110167158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-21111167157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-21111167157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-21111167157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-21111167157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-21110167158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-21110167158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-21110167158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-21110167158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-21110167158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-21110167158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030697.10.0PREDICTED: myb-related protein 2
RefseqXP_007030698.10.0PREDICTED: myb-related protein 2
SwissprotQ9SQQ91e-164PHL9_ARATH; Myb-related protein 2
TrEMBLA0A061F2V10.0A0A061F2V1_THECC; Homeodomain-like superfamily protein isoform 1
STRINGEOY111980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-164G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]