PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026346t1
Common NameTCM_026346
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 346aa    MW: 36024.6 Da    PI: 5.8537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026346t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10195239554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Thecc1EG026346t1 195 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 239
                       99***********************8.....6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.1E-15188250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-11188244No hitNo description
PROSITE profilePS5088816.526190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-16192252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7195239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAGNQQEGLG DDFFEQILAV PPGYGGGAGG GGASEVGGAT LPMVLQLGSS GGPAGGSGGD  60
GGGGGFRGMG IGVGMGMMPL GLNLEHGFLR HEDGVVVDSN NNNSNNNNNN ASCSAASAVS  120
GISERDSMHM TSLFPPFGQM QTQQIRPSPP PPQPPPQLHQ QFHSQPTSGP VAAAPHPPAI  180
RPRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPSC NKTDRAAMLD EIVDYVKFLR  240
LQVKVLSMSR LGAAGAVAQL VADVPLSSVE GDGIEGGTQP AWEKWSNDGT EQQVAKLMEE  300
DIGAAMQFLQ SKALCIMPIS LASAIFRTHQ PDAPTIVKPE SSTPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030571.10.0PREDICTED: transcription factor UNE12 isoform X1
SwissprotO227681e-85UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A061F2D00.0A0A061F2D0_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOY110730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]