PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG026346t1 | ||||||||
Common Name | TCM_026346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 36024.6 Da PI: 5.8537 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 3.9e-10 | 195 | 239 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + v+Y+k L Thecc1EG026346t1 195 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 239 99***********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.1E-15 | 188 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.60E-11 | 188 | 244 | No hit | No description |
PROSITE profile | PS50888 | 16.526 | 190 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-16 | 192 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-7 | 195 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-12 | 196 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAGNQQEGLG DDFFEQILAV PPGYGGGAGG GGASEVGGAT LPMVLQLGSS GGPAGGSGGD 60 GGGGGFRGMG IGVGMGMMPL GLNLEHGFLR HEDGVVVDSN NNNSNNNNNN ASCSAASAVS 120 GISERDSMHM TSLFPPFGQM QTQQIRPSPP PPQPPPQLHQ QFHSQPTSGP VAAAPHPPAI 180 RPRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPSC NKTDRAAMLD EIVDYVKFLR 240 LQVKVLSMSR LGAAGAVAQL VADVPLSSVE GDGIEGGTQP AWEKWSNDGT EQQVAKLMEE 300 DIGAAMQFLQ SKALCIMPIS LASAIFRTHQ PDAPTIVKPE SSTPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 204 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007030571.1 | 0.0 | PREDICTED: transcription factor UNE12 isoform X1 | ||||
Swissprot | O22768 | 1e-85 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A061F2D0 | 0.0 | A0A061F2D0_THECC; Basic helix-loop-helix DNA-binding superfamily protein | ||||
STRING | EOY11073 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1611 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 1e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG026346t1 |
Entrez Gene | 18600191 |
Publications ? help Back to Top | |||
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