PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026195t2
Common NameTCM_026195
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 968aa    MW: 108904 Da    PI: 5.0784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026195t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.7e-14853248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Thecc1EG026195t2  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                      78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Thecc1EG026195t2  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                       68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139214.2E-131070No hitNo description
CDDcd001677.55E-121053No hitNo description
SuperFamilySSF466898.27E-2133106IPR009057Homeodomain-like
CDDcd116591.60E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118311.2E-60407655IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACARD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRKGIDYN SEIPFEKRPP PGFYDVADED RLVEQPKFPT  240
TIEELEGKRR VDIESQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEEI AKMGYASDLL AGNDELAEGS GATRALLANY SQTPRQGMTP LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKRENQTPNP MSTPSMTPGG  420
AGLTPRIGMT PSRDGYSFGV TPKGTPIRDE LHINEDMDLN DSAKLEQRRQ PDLRRNLRSG  480
LGSLPQPKNE YQIVIQPLPE ENEEPEEKIE EDMSDRIARE RAEEEARLQA LLKKRSKVLQ  540
RELPRPPSAS LELIRDSLLR TDGDKSSFVP PTSIEQADEM IRKELLSLLE HDNAKYPLDE  600
KANKGKKKGT KRPANGSIPS IEDFEEDEMK EADSLIKEEA EFLRVAMGHE NESLDDFVEA  660
HNTCLNDLMY FPTRNAYGLS SVAGNMEKLA ALQTEFDNVK KKLDNDKSKA ESMEKKFNVL  720
TQGYERRAAT LWRQIESTFK QMDTAGTELE CFQALQKQEQ FAASHRINGL WEEVQKQKEL  780
EQTLQRRYGN LIAELERIQI LMNIYRVQAQ KQEEAAGKDH ALELSEAAVA ANPAVVPSTV  840
LSEPVPSSEH VDSSLDEQSS LKADMNVDSR KEHAIMDVET DGIMSGNVPL VVEDKEDNIS  900
KTLDGMTGNI VTSSEVAAES INPDAVSTKQ DSIQETLEGE GVADHTKVDN SSVLGGDTAE  960
KQTGMEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027993799Cell division cycle 5-like protein
5xjc_L0.027993799Cell division cycle 5-like protein
5yzg_L0.027993799Cell division cycle 5-like protein
5z56_L0.027993799Cell division cycle 5-like protein
5z57_L0.027993799Cell division cycle 5-like protein
5z58_L0.027993799Cell division cycle 5-like protein
6ff4_L0.027993799Cell division cycle 5-like protein
6ff7_L0.027993799Cell division cycle 5-like protein
6icz_L0.027993799Cell division cycle 5-like protein
6id0_L0.027993799Cell division cycle 5-like protein
6id1_L0.027993799Cell division cycle 5-like protein
6qdv_O0.027993799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRQRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976913.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A061F8T90.0A0A061F8T9_THECC; Cell division cycle 5 isoform 1
STRINGEOY109300.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]