PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026171t4

Common Name

TCM_026171

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 457aa MW: 50962.6 Da PI: 5.3739

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026171t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	230	284	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHe+Fv+av+ LGGse+AtPk il+lmkv+gLt++hvkSHLQkYR+ Thecc1EG026171t4 230 RPRMRWTPELHEAFVDAVNILGGSERATPKGILKLMKVEGLTIYHVKSHLQKYRT 284 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.196	227	287	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-18	228	284	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-30	229	286	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-24	231	284	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	232	283	IPR001005	SANT/Myb domain
Pfam	PF14379	9.6E-24	315	361	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MSSSFPALPT PFKEKYPKLP DSFQVSSERK VMKNSISPQE SSLAPSNRTL GNSFSSPSIA 60 NNDMCASALA HDRHSQSPAF ISQRSRDLAS LPSIDSSYSD QSTALFNHPQ EKKDVSWCID 120 RLQDFLDLPE NVPDPNGLLE SSTGVMASED HSKRTDWQEW ADQLISVDDP LDTDWREFLD 180 DTNASDPKVK VLNSSGDISK QQPQFHQNQP APHGEFSSDA YPLSPAPPTR PRMRWTPELH 240 EAFVDAVNIL GGSERATPKG ILKLMKVEGL TIYHVKSHLQ KYRTARYKPE SSEGTLENKM 300 ASIGEMKSLD LKAGMGITEA LRLQMEVQKQ LHEQLEIQRN LQLRIEEQGR YLQMMFEKQK 360 RMEDERTGAP SFNLDDASAS LPGLTCPSCA NDKSEALEQV HTKTGIDTRN ASTTEDKSSQ 420 DVSRKQKALE TNTADHIETN DNESGSPLSK RARTEK*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MSSSFPALPT PFKEKYPKLP DSFQVSSERK VMKNSISPQE SSLAPSNRTL GNSFSSPSIA  60
NNDMCASALA HDRHSQSPAF ISQRSRDLAS LPSIDSSYSD QSTALFNHPQ EKKDVSWCID  120
RLQDFLDLPE NVPDPNGLLE SSTGVMASED HSKRTDWQEW ADQLISVDDP LDTDWREFLD  180
DTNASDPKVK VLNSSGDISK QQPQFHQNQP APHGEFSSDA YPLSPAPPTR PRMRWTPELH  240
EAFVDAVNIL GGSERATPKG ILKLMKVEGL TIYHVKSHLQ KYRTARYKPE SSEGTLENKM  300
ASIGEMKSLD LKAGMGITEA LRLQMEVQKQ LHEQLEIQRN LQLRIEEQGR YLQMMFEKQK  360
RMEDERTGAP SFNLDDASAS LPGLTCPSCA NDKSEALEQV HTKTGIDTRN ASTTEDKSSQ  420
DVSRKQKALE TNTADHIETN DNESGSPLSK RARTEK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-31	230	288	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-31	230	288	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-31	230	288	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-31	230	288	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-31	230	288	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-31	230	288	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-31	230	288	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-31	230	288	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00532	DAP	Transfer from AT5G29000	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007030374.2	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X1
Refseq	XP_017977044.1	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X1
TrEMBL	A0A061F0K2	0.0	A0A061F0K2_THECC; Homeodomain-like superfamily protein, putative isoform 1
STRING	EOY10878	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	2e-99	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG026171t4
Entrez Gene	18600059

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]