PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026171t3
Common NameTCM_026171
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 426aa    MW: 47451.6 Da    PI: 5.1394
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026171t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.61.4e-33199253155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +pr+rWtpeLHe+Fv+av+ LGGse+AtPk il+lmkv+gLt++hvkSHLQkYR+
  Thecc1EG026171t3 199 RPRMRWTPELHEAFVDAVNILGGSERATPKGILKLMKVEGLTIYHVKSHLQKYRT 253
                       59****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.196196256IPR017930Myb domain
SuperFamilySSF466894.3E-18197253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-30198255IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24200253IPR006447Myb domain, plants
PfamPF002491.2E-9201252IPR001005SANT/Myb domain
PfamPF143798.7E-24284330IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MKNSISPQES SLAPSNRTLG NSFSSPSIAN NDMCASALAH DRHSQSPAFI SQRSRDLASL  60
PSIDSSYSDQ STALFNHPQE KKDVSWCIDR LQDFLDLPEN VPDPNGLLES STGVMASEDH  120
SKRTDWQEWA DQLISVDDPL DTDWREFLDD TNASDPKVKV LNSSGDISKQ QPQFHQNQPA  180
PHGEFSSDAY PLSPAPPTRP RMRWTPELHE AFVDAVNILG GSERATPKGI LKLMKVEGLT  240
IYHVKSHLQK YRTARYKPES SEGTLENKMA SIGEMKSLDL KAGMGITEAL RLQMEVQKQL  300
HEQLEIQRNL QLRIEEQGRY LQMMFEKQKR MEDERTGAPS FNLDDASASL PGLTCPSCAN  360
DKSEALEQVH TKTGIDTRNA STTEDKSSQD VSRKQKALET NTADHIETND NESGSPLSKR  420
ARTEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-31199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-31199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-31199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-31199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-31199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-31199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-31199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-31199257260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017977045.10.0PREDICTED: protein PHR1-LIKE 1 isoform X2
TrEMBLA0A061F2F20.0A0A061F2F2_THECC; Homeodomain-like superfamily protein, putative isoform 3
STRINGEOY108780.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.23e-93G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]