PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026054t1
Common NameTCM_026054
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 229aa    MW: 25908.3 Da    PI: 5.6681
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026054t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-17550348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +WT+eEd ll+++++q+G g W++++   g++R++k+c++rw++yl
  Thecc1EG026054t1  5 AWTEEEDHLLKKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                      7*******************************************97 PP

2Myb_DNA-binding482.9e-1556100147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++ +eE +l+++++++lG++ W++Ia +++ gRt++++k++w+ +
  Thecc1EG026054t1  56 RGSFAKEEVQLIIKLHRLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100
                       78999*****************.*********.***********977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.089150IPR017930Myb domain
SMARTSM007174.2E-13252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-21557IPR009057Homeodomain-like
PfamPF002491.3E-15550IPR001005SANT/Myb domain
SuperFamilySSF466893.01E-27597IPR009057Homeodomain-like
CDDcd001671.59E-10550No hitNo description
PROSITE profilePS5129425.2951105IPR017930Myb domain
SMARTSM007175.8E-1555103IPR001005SANT/Myb domain
PfamPF002491.3E-135698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2458105IPR009057Homeodomain-like
CDDcd001672.14E-1061101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIEQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIKRGSFA  60
KEEVQLIIKL HRLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNIGQE TEEKENAINA  120
VIRPQPGGNA TTGSVKPRSQ DIVPNSQLTI EESSMSTPFH FVEVAQQGQE LVKEEDSSLG  180
VEEPGILGDM RTDIGQFHEL NILSTDEGCG KWDWDDLVLD MDLWTDSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-22610610109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030250.21e-167PREDICTED: transcription factor MYB75
SwissprotQ9FNV94e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A061F2611e-168A0A061F261_THECC; Myb domain protein 113, putative
STRINGEOY107521e-169(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17352611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-58myb domain protein 113
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]