PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG026054t1 | ||||||||
Common Name | TCM_026054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 25908.3 Da PI: 5.6681 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 5 | 50 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++++q+G g W++++ g++R++k+c++rw++yl Thecc1EG026054t1 5 AWTEEEDHLLKKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50 7*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.9e-15 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ +eE +l+++++++lG++ W++Ia +++ gRt++++k++w+ + Thecc1EG026054t1 56 RGSFAKEEVQLIIKLHRLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100 78999*****************.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.089 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-13 | 2 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-21 | 5 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-15 | 5 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.01E-27 | 5 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-10 | 5 | 50 | No hit | No description |
PROSITE profile | PS51294 | 25.29 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-15 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-24 | 58 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.14E-10 | 61 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGGVAWTEEE DHLLKKCIEQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIKRGSFA 60 KEEVQLIIKL HRLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNIGQE TEEKENAINA 120 VIRPQPGGNA TTGSVKPRSQ DIVPNSQLTI EESSMSTPFH FVEVAQQGQE LVKEEDSSLG 180 VEEPGILGDM RTDIGQFHEL NILSTDEGCG KWDWDDLVLD MDLWTDSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-22 | 6 | 106 | 10 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007030250.2 | 1e-167 | PREDICTED: transcription factor MYB75 | ||||
Swissprot | Q9FNV9 | 4e-55 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A061F261 | 1e-168 | A0A061F261_THECC; Myb domain protein 113, putative | ||||
STRING | EOY10752 | 1e-169 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17352 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 6e-58 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG026054t1 |
Entrez Gene | 18599972 |
Publications ? help Back to Top | |||
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