PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026028t1

Common Name

TCM_026028

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 388aa MW: 43540.7 Da PI: 7.2022

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026028t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	185.4	1.3e-57	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdee++++yL++kv ++++++ ++i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke++ Thecc1EG026028t1 16 LPPGFRFHPTDEEIITHYLTEKVMNSNFSA-SAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIY 107 79************************99.88***********99999************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + kg lvg+kktLvfykgrapkgek++Wvmheyrle Thecc1EG026028t1 108 KGKGCLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 143 9*******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-64	12	168	IPR003441	NAC domain
PROSITE profile	PS51005	60.503	16	167	IPR003441	NAC domain
Pfam	PF02365	9.1E-30	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEEAIVVNKG EDLIDLPPGF RFHPTDEEII THYLTEKVMN SNFSASAIGE VDLNKCEPWD 60 LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIYKGK GCLVGMKKTL 120 VFYKGRAPKG EKSNWVMHEY RLEGKFSYYN LPKGAKDEWV VCRVFHKNIG IKKPIPDQLL 180 RMNSFGDDLM DYASLPPLMD PTYSNKAGSS FTDGQNEFKA IDTTPMPRSS EGNYPGSSNF 240 PTMNNNQNFL QAPNNHYHQT GSSMFNPQIP IQNPILFHQG TPNSAYSHQG RTSGSASSNY 300 STGFGGNDQA ILRALAANNS ADTRKADRQC KVEQFSSNQS MVSLSQDTGL STEINNTEIS 360 SVLSKRMELG SSKSYEDIED LGCLWDY*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEEAIVVNKG EDLIDLPPGF RFHPTDEEII THYLTEKVMN SNFSASAIGE VDLNKCEPWD  60
LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIYKGK GCLVGMKKTL  120
VFYKGRAPKG EKSNWVMHEY RLEGKFSYYN LPKGAKDEWV VCRVFHKNIG IKKPIPDQLL  180
RMNSFGDDLM DYASLPPLMD PTYSNKAGSS FTDGQNEFKA IDTTPMPRSS EGNYPGSSNF  240
PTMNNNQNFL QAPNNHYHQT GSSMFNPQIP IQNPILFHQG TPNSAYSHQG RTSGSASSNY  300
STGFGGNDQA ILRALAANNS ADTRKADRQC KVEQFSSNQS MVSLSQDTGL STEINNTEIS  360
SVLSKRMELG SSKSYEDIED LGCLWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	14	173	18	174	NAC domain-containing protein 19
3swm_B	2e-53	14	173	18	174	NAC domain-containing protein 19
3swm_C	2e-53	14	173	18	174	NAC domain-containing protein 19
3swm_D	2e-53	14	173	18	174	NAC domain-containing protein 19
3swp_A	2e-53	14	173	18	174	NAC domain-containing protein 19
3swp_B	2e-53	14	173	18	174	NAC domain-containing protein 19
3swp_C	2e-53	14	173	18	174	NAC domain-containing protein 19
3swp_D	2e-53	14	173	18	174	NAC domain-containing protein 19
4dul_A	2e-53	14	173	15	171	NAC domain-containing protein 19
4dul_B	2e-53	14	173	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ914139	0.0	JQ914139.1 Gossypium hirsutum NAC domain protein 8 (NAC8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007030224.1	0.0	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FK44	1e-121	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A061F119	0.0	A0A061F119_THECC; NAC domain protein, IPR003441, putative
STRING	EOY10726	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-123	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Thecc1EG026028t1
Entrez Gene	18599955

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]