PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025910t1
Common NameTCM_025910
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 306aa    MW: 34561.6 Da    PI: 7.9509
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025910t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-182572148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Thecc1EG025910t1 25 RGPWTPEEDELLANYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 72
                      89******************************99************97 PP
2Myb_DNA-binding48.42.2e-1578123148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG025910t1  78 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123
                       678889****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-221674IPR009057Homeodomain-like
PROSITE profilePS5129416.2042072IPR017930Myb domain
SuperFamilySSF466898.8E-2922119IPR009057Homeodomain-like
SMARTSM007172.7E-132474IPR001005SANT/Myb domain
PfamPF002496.1E-162572IPR001005SANT/Myb domain
CDDcd001675.46E-112772No hitNo description
PROSITE profilePS5129424.57873127IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2475128IPR009057Homeodomain-like
SMARTSM007173.4E-1477125IPR001005SANT/Myb domain
PfamPF002496.8E-1479123IPR001005SANT/Myb domain
CDDcd001672.51E-1183123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRNPSLSGTS ATSKTPCCSK VGIKRGPWTP EEDELLANYI KREGEGRWRT LPKRAGLLRC  60
GKSCRLRWMN YLRPSVKRGR IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN  120
THLSKKLISQ GIDPRTHKPL NPISHTSSQV NHDPVPKPNP IPPNFNSSQL EENTIAMTTK  180
TTTQDFTPTN LEYHQQYDQN QQVVDSTVNR RNPDGATLIV GQPSSLGNEG DYIENCNEDM  240
FSSFLDSLIN DNLFVNQQQP NNVVAAEAST QNFTHGNIWE AEIMSSMVAF GNEQNPFINH  300
HQHQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24251277108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030073.20.0PREDICTED: transcription repressor MYB5
SwissprotQ388507e-82MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A061EZP20.0A0A061EZP2_THECC; Myb domain protein 5, putative
STRINGEOY105750.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-83myb domain protein 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]