PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG025807t2 | ||||||||
Common Name | TCM_025807 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Dof | ||||||||
Protein Properties | Length: 473aa MW: 51570.6 Da PI: 6.0633 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.3 | 4e-39 | 79 | 138 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Thecc1EG025807t2 79 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 138 78999*****************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-30 | 67 | 136 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.8E-32 | 80 | 137 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.705 | 83 | 137 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 85 | 121 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MLGYFDFEFQ DTSSEITNPE TETSYTNTSG DPDKSITVEN DKEEHQTSMK SNEIQTNSKL 60 KEEQSETDSA DQEKVFKKPD KVLPCPRCNS LDTKFCYFNN YNVNQPRHFC KNCQRYWTAG 120 GTMRNVPIGA GRRKNKHLAS QYRQIIVSSD GVPMTRIETP DSANQQLLPP GESTTAFRPS 180 MGNGTVLKFG AEAPLCESME TVLSLGDQKR SVEMGTVSCG EIREEPSSCG SSATPCSIPG 240 NHLPGNVMQK ERVGLAGPNE QITQHPPQCY PIPPWIFPWN PGMNNVAPMA VGQSSSERIG 300 ALNSSTSNAV QWCPTPMMAV PGFCPPNVPL QFVPAYWGCM PLWAASGGNV SFSGSNGCLS 360 PSSSTSNSCC SGNGSPRLGK HSRETNFVEE QSEKCVLVPK TLRIDDPNEA SRSPIWATLG 420 IKPDQKDPLR RGKIFNAFDS KAEGKDHLLD GSHILEANPA ALSRSHTFQE ST* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007029943.2 | 0.0 | PREDICTED: cyclic dof factor 2 isoform X2 | ||||
TrEMBL | A0A061EZB4 | 0.0 | A0A061EZB4_THECC; Cycling DOF factor 2, putative isoform 2 | ||||
STRING | EOY10444 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-68 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG025807t2 |
Entrez Gene | 18599777 |
Publications ? help Back to Top | |||
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