PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025807t2
Common NameTCM_025807
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Dof
Protein Properties Length: 473aa    MW: 51570.6 Da    PI: 6.0633
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025807t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.34e-3979138261
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                       ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Thecc1EG025807t2  79 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 138
                       78999*****************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3067136IPR003851Zinc finger, Dof-type
PfamPF027016.8E-3280137IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.70583137IPR003851Zinc finger, Dof-type
PROSITE patternPS01361085121IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLGYFDFEFQ DTSSEITNPE TETSYTNTSG DPDKSITVEN DKEEHQTSMK SNEIQTNSKL  60
KEEQSETDSA DQEKVFKKPD KVLPCPRCNS LDTKFCYFNN YNVNQPRHFC KNCQRYWTAG  120
GTMRNVPIGA GRRKNKHLAS QYRQIIVSSD GVPMTRIETP DSANQQLLPP GESTTAFRPS  180
MGNGTVLKFG AEAPLCESME TVLSLGDQKR SVEMGTVSCG EIREEPSSCG SSATPCSIPG  240
NHLPGNVMQK ERVGLAGPNE QITQHPPQCY PIPPWIFPWN PGMNNVAPMA VGQSSSERIG  300
ALNSSTSNAV QWCPTPMMAV PGFCPPNVPL QFVPAYWGCM PLWAASGGNV SFSGSNGCLS  360
PSSSTSNSCC SGNGSPRLGK HSRETNFVEE QSEKCVLVPK TLRIDDPNEA SRSPIWATLG  420
IKPDQKDPLR RGKIFNAFDS KAEGKDHLLD GSHILEANPA ALSRSHTFQE ST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007029943.20.0PREDICTED: cyclic dof factor 2 isoform X2
TrEMBLA0A061EZB40.0A0A061EZB4_THECC; Cycling DOF factor 2, putative isoform 2
STRINGEOY104440.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-68cycling DOF factor 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]