PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025807t1
Common NameTCM_025807
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Dof
Protein Properties Length: 488aa    MW: 52925.2 Da    PI: 6.6527
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025807t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.1e-3994153261
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                       ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Thecc1EG025807t1  94 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 153
                       78999*****************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3082151IPR003851Zinc finger, Dof-type
PfamPF027017.1E-3295152IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.70598152IPR003851Zinc finger, Dof-type
PROSITE patternPS013610100136IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MNGGDPAFKL FGRKIAVPEP QIHAGDTSSE ITNPETETSY TNTSGDPDKS ITVENDKEEH  60
QTSMKSNEIQ TNSKLKEEQS ETDSADQEKV FKKPDKVLPC PRCNSLDTKF CYFNNYNVNQ  120
PRHFCKNCQR YWTAGGTMRN VPIGAGRRKN KHLASQYRQI IVSSDGVPMT RIETPDSANQ  180
QLLPPGESTT AFRPSMGNGT VLKFGAEAPL CESMETVLSL GDQKRSVEMG TVSCGEIREE  240
PSSCGSSATP CSIPGNHLPG NVMQKERVGL AGPNEQITQH PPQCYPIPPW IFPWNPGMNN  300
VAPMAVGQSS SERIGALNSS TSNAVQWCPT PMMAVPGFCP PNVPLQFVPA YWGCMPLWAA  360
SGGNVSFSGS NGCLSPSSST SNSCCSGNGS PRLGKHSRET NFVEEQSEKC VLVPKTLRID  420
DPNEASRSPI WATLGIKPDQ KDPLRRGKIF NAFDSKAEGK DHLLDGSHIL EANPAALSRS  480
HTFQEST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007029942.20.0PREDICTED: cyclic dof factor 2 isoform X1
TrEMBLA0A061F7F70.0A0A061F7F7_THECC; Cycling DOF factor 2, putative isoform 1
STRINGEOY104440.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155911017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-71cycling DOF factor 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]