PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025795t1
Common NameTCM_025795
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 379aa    MW: 42704.6 Da    PI: 8.76
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025795t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-175097148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Thecc1EG025795t1 50 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 97
                      79******************************99************97 PP
2Myb_DNA-binding45.51.8e-14103148148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Thecc1EG025795t1 103 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 148
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2341100IPR009057Homeodomain-like
PROSITE profilePS5129425.07545101IPR017930Myb domain
SuperFamilySSF466891.61E-3047144IPR009057Homeodomain-like
SMARTSM007172.4E-144999IPR001005SANT/Myb domain
PfamPF002493.9E-165097IPR001005SANT/Myb domain
CDDcd001678.52E-115297No hitNo description
Gene3DG3DSA:1.10.10.608.9E-25101153IPR009057Homeodomain-like
SMARTSM007173.5E-13102150IPR001005SANT/Myb domain
PROSITE profilePS5129418.75102152IPR017930Myb domain
PfamPF002496.9E-13103148IPR001005SANT/Myb domain
CDDcd001679.22E-9105148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVMAPFESSF YSRKPRKKRE ERKRKEAKEV ELESKAMGRP PCCDKVGIKK GPWTPEEDII  60
LVSYIQEHGP GNWRSVPTNT GLLRCSKSCR LRWTNYLRPG IKRGNFTPHE EGMIIHLQAL  120
LGNKWAAIAS YLPQRTDNDI KNYWNTHLKK KLKKFQSALE PNMAQDSTAT SHQFVSKSLN  180
ERRSLDFGTP AASTTLRLNQ TSSSSSTYAS STENISRLLE GWMRSSPKTN SSNSTTLLKE  240
KWSHHQNNNS FDNNDSIGST SAAAPTSLQG GYRRKAEQEG GELISHEEFE SILSFENMNN  300
VAWDKSTCDS TSKGTCQDSG NDDDKVNNVT MTPETRKQKA DQSNNNNPPL SFLEKWLLDE  360
SSGQVEEMNQ MMELSSIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-234815225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11219RKPRKKRE
21724KREERKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1353151e-111BT135315.1 Lotus japonicus clone JCVI-FLLj-18D4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976067.10.0PREDICTED: myb-related protein 306
SwissprotB3VTV71e-140MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A061F7E00.0A0A061F7E0_THECC; Myb domain protein 60
STRINGEOY104290.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.19e-95myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]