PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025482t1
Common NameTCM_025482
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 501aa    MW: 55336.5 Da    PI: 5.0392
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025482t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36251162102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+++ed+++++++sws+ +nsfvv++  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  Thecc1EG025482t1  25 FLSKTYDMVEDPSTNSVVSWSSGNNSFVVWKVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 108
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r+k 
  Thecc1EG025482t1 109 KTISRRKP 116
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3915109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.48E-3520114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MDSLHDSISA ANAAAATNGN TVPPFLSKTY DMVEDPSTNS VVSWSSGNNS FVVWKVPEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKT ISRRKPANVH  120
NNQQPQVQSS SVGACVEVGK FGLEEEVERL KRDKNVLMQE LVRLRQQQQT TDNQLQTVGQ  180
RVQLMEQRQQ QMMSFLAKAM QSPGFLSQLV QQQNESNRRL TGGNKKRRLP RQDEENLTGE  240
HGAISPNGQI VKFQPSLNEA AKAMLHQILK MNTSSRLESS MNSPGAFMID GVPPSNAVDS  300
GSSSSRISGV TLSEVPPASG QSYLQAESGF PDTCPSTATH LTTEHTKVDQ ISEINKSQKD  360
AAFPNFPQMQ GIVPGNTVEF TDASLAGSER GNTEYVDQMS AGLNGGMPVE TDDFSTDHDM  420
DILLEGTPKL PAINDVFWEQ FLTTSPLTED TDEITSSSLE NGANIEQESL LVQENGWDKI  480
PHMNHLTEQI GLLTSDSRRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-261511419129Heat shock factor protein 1
5d5v_B3e-261511419129Heat shock factor protein 1
5d5v_D3e-261511419129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007029602.10.0PREDICTED: heat stress transcription factor A-1e
SwissprotQ84T611e-170HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A061F6G90.0A0A061F6G9_THECC; Heat shock factor protein HSF8, putative
STRINGEOY101040.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-125heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]