PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG025441t1 | ||||||||
Common Name | TCM_025441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 136aa MW: 15555.7 Da PI: 7.9443 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.5 | 3.8e-21 | 27 | 101 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +e yfF+ ++y+t ++ + +tksgyWkatg+++++ + ++e vg k+++vfy g+ap++++++W+m+e+++ Thecc1EG025441t1 27 RKANEAYFFTIVPQAYSTAEQMEGSTKSGYWKATGETEQIDH-HNEIVGFKRIFVFYCGEAPTAKESSWMMNEFSV 101 256799**********************************99.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.191 | 1 | 126 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.97E-20 | 26 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-9 | 31 | 100 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MSCRWKMLNN LNSTRHNDIA CNFTKLRKAN EAYFFTIVPQ AYSTAEQMEG STKSGYWKAT 60 GETEQIDHHN EIVGFKRIFV FYCGEAPTAK ESSWMMNEFS VNPSLVQDNE LDLRTNVTKF 120 CIAYVKLGPI FAYRA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021281939.1 | 1e-56 | NAC domain-containing protein 59-like | ||||
TrEMBL | A0A061EZ34 | 1e-98 | A0A061EZ34_THECC; Uncharacterized protein | ||||
STRING | EOY10056 | 2e-99 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17601 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 7e-16 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG025441t1 |
Entrez Gene | 18599496 |
Publications ? help Back to Top | |||
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