PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG025260t2 | ||||||||
Common Name | TCM_025260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 412aa MW: 45110.8 Da PI: 8.7765 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 21 | 47 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Thecc1EG025260t2 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 68 | 92 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Thecc1EG025260t2 68 QPECQYYLKTGTCKFGATCKFHHPR 92 799********************96 PP | |||||||
3 | zf-CCCH | 38 | 2.8e-12 | 114 | 138 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Thecc1EG025260t2 114 EPECAYYLRTGQCKFGSTCKFHHPQ 138 799********************97 PP | |||||||
4 | zf-CCCH | 36.3 | 9.5e-12 | 272 | 298 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G C+F+H++ Thecc1EG025260t2 272 PGQPECQFYMKTGDCKFGTVCRFHHPR 298 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.8 | 3.5e-13 | 318 | 344 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ Thecc1EG025260t2 318 PGEPLCIFYSRYGICKFGPSCKFNHPM 344 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.587 | 20 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-8 | 22 | 47 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 25 | 48 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-4 | 26 | 46 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-10 | 68 | 92 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 69 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-5 | 71 | 92 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-6 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-10 | 114 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 114 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 117 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.399 | 271 | 299 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-8 | 273 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-5 | 275 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 277 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-7 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.727 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 319 | 344 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-5 | 320 | 344 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 322 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MWQMNLRSSE TMESGPYPER PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIAAARMKG 60 EFPERAGQPE CQYYLKTGTC KFGATCKFHH PRDKAGIAGR VSLNILGYPL RPNEPECAYY 120 LRTGQCKFGS TCKFHHPQPT NMMVSVRGSP IYQTVPSPTT PGQQSYAGGI TNWSRASFIP 180 SPRWQGPSSY APLILPQGVV SVPGWNAYSG QLASVSSSEN LLQTNGNNQY GTTHQNESAT 240 AGSQASFSQF RSGSVPVGFY ALQRENVFPE RPGQPECQFY MKTGDCKFGT VCRFHHPRER 300 VLPAPDCVLS PIGLPLRPGE PLCIFYSRYG ICKFGPSCKF NHPMGIFTYN YSTSSPSDAP 360 VHRLLGSSSG TAGLNLSSEG LVEAGSTKTR RLSLSENRQL SSSDDNIDTE G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007029391.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A061EZ03 | 0.0 | A0A061EZ03_THECC; Zinc finger CCCH domain-containing protein 33 isoform 1 | ||||
STRING | EOY09893 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG025260t2 |
Entrez Gene | 18599382 |
Publications ? help Back to Top | |||
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