PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG025221t1

Common Name

TCM_025221

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 348aa MW: 40235.5 Da PI: 4.3806

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG025221t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	72.6	1e-22	4	160	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpkkvka.......eekewyfFskrdk...kyatgkrknra.... 77 G+ F+P+d ++v++yL ++g++++ vi +diy+++P+ + v++ ++++ + F++r++ k+a+gkr++r+ Thecc1EG025221t1 4 LGVVFDPSDRDIVSHYLPMLISGESMSSLGdlqyVIGFADIYSTKPSVFFD-VNNgnglpflKSNQRFIFTHRQRiskKNANGKRPRRIlech 95 699********************55433344379999****9952.22223455556678899999876222566899999988999 PP NAM 78 .........tksgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 + gyW+++ +k++l+++++++g +tL f+ k+++++++kt+W+mheyrl Thecc1EG025221t1 96 hydetlgvgDSGGYWRSSTAEKPILDEQQQEIGFVRTLNFFefkdeKKSRKDATKTRWLMHEYRL 160 999998887679*************************8877656778889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	28.257	2	176	IPR003441	NAC domain
SuperFamily	SSF101941	1.23E-25	4	174	IPR003441	NAC domain
Pfam	PF02365	4.6E-13	5	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MYSLGVVFDP SDRDIVSHYL PMLISGESMS SLGDLQYVIG FADIYSTKPS VFFDVNNGNG 60 LPFLKSNQRF IFTHRQRISK KNANGKRPRR ILECHHYDET LGVGDSGGYW RSSTAEKPIL 120 DEQQQEIGFV RTLNFFEFKD EKKSRKDATK TRWLMHEYRL PGDTFQEWVI CKIKDTSGSP 180 HDEYSDSIWE KELFGKLLLP HSDENHHHQD EYQSQIQSST VFNNGNLPSY EVDQLLDDDP 240 FKEVDQLLEI NDDNQIQTQS STVFNNGNLR SFEVDQLLYA HEKEISKDDD PIKDVDQLWE 300 INDDNQIVDY SFKEMEQLLG MNDNDPIADV DKALATMNSY YLPDLLD*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MYSLGVVFDP SDRDIVSHYL PMLISGESMS SLGDLQYVIG FADIYSTKPS VFFDVNNGNG  60
LPFLKSNQRF IFTHRQRISK KNANGKRPRR ILECHHYDET LGVGDSGGYW RSSTAEKPIL  120
DEQQQEIGFV RTLNFFEFKD EKKSRKDATK TRWLMHEYRL PGDTFQEWVI CKIKDTSGSP  180
HDEYSDSIWE KELFGKLLLP HSDENHHHQD EYQSQIQSST VFNNGNLPSY EVDQLLDDDP  240
FKEVDQLLEI NDDNQIQTQS STVFNNGNLR SFEVDQLLYA HEKEISKDDD PIKDVDQLWE  300
INDDNQIVDY SFKEMEQLLG MNDNDPIADV DKALATMNSY YLPDLLD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976495.1	0.0	PREDICTED: NAC domain-containing protein 67-like
TrEMBL	A0A061EYW1	0.0	A0A061EYW1_THECC; Uncharacterized protein
STRING	EOY09848	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16333	2	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.3	4e-13	NAC family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG025221t1
Entrez Gene	18599350

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]