PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025212t1
Common NameTCM_025212
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 348aa    MW: 40229.5 Da    PI: 4.4032
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025212t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.91.6e-2241603128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpkkvka.......eekewyfFskrdk...kyatgkrknra.... 77 
                        G+ F+P+d ++v++yL   ++g++++       vi  +diy+++P+ +   v++       ++++ + F++r++   k+a+gkr++r+    
  Thecc1EG025212t1   4 LGVVFDPSDRDIVSHYLPMLISGESMSSLGdlqyVIGFADIYSTKPSVFFD-VNNgnglpflKSNQRFIFTHRQRiskKNANGKRPRRIlesh 95 
                       699**********************55433344379999********9952.22223455556678899999876222566899999988999 PP

               NAM  78 .........tksgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                                 + gyW+++  +k++l+++++++g  +tL f+     k+++++++kt+W+mheyrl
  Thecc1EG025212t1  96 hydeklgvgDSGGYWRSSTAEKPILDEQRKEIGFVRTLNFFefedaKKSRKDATKTRWLMHEYRL 160
                       999999987779*****************************8877667888899*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.5272176IPR003441NAC domain
SuperFamilySSF1019411.44E-254174IPR003441NAC domain
PfamPF023654.8E-135160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MYSLGVVFDP SDRDIVSHYL PMLISGESMS SLGDLQYVIG FADIYSTKPS VFFDVNNGNG  60
LPFLKSNQRF IFTHRQRISK KNANGKRPRR ILESHHYDEK LGVGDSGGYW RSSTAEKPIL  120
DEQRKEIGFV RTLNFFEFED AKKSRKDATK TRWLMHEYRL SGDTFQEWVI CKIKDTSGSP  180
HDEYSDSIWE KELFGKLLLP HSDENHHHQD EYQSQIQSST VFNDGNLPSY EVDQLLDDDP  240
FKEVDQLLEI NDDNQIQTQS FTVFNKGNLP RYEVDQLLYA HEKEISKDDD PFKEVDQLLE  300
INDDSQIADY PFKEMEQLLG MNDNDPIADV DEALATMNSY YLSDLLD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976495.10.0PREDICTED: NAC domain-containing protein 67-like
TrEMBLA0A061EYG00.0A0A061EYG0_THECC; Uncharacterized protein
STRINGEOY098360.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16333214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.39e-14NAC family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]