PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG025180t1 | ||||||||
Common Name | TCM_025180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 40267.4 Da PI: 4.3249 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.3 | 2.4e-22 | 4 | 160 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpkkvka.......eekewyfFskrdk...kyatgkrknra.... 77 G+ F+P+d ++v++yL ++g++++ vi diy+++P+ + v++ ++++ + F++r++ k+a+gkr++r+ Thecc1EG025180t1 4 LGVVFDPSDRDIVSHYLPMLISGESMSSLGdlqyVIGFEDIYSTKPSVFFD-VNNgnglpflKSNQRFIFTHRQRiskKNANGKRPRRIlesh 95 699**********************55533344379999********9952.22223455556678899999876222566899999988999 PP NAM 78 .........tksgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 + gyW+++ +k++l+++++++g +tL f+ k+++++++kt+W+mheyrl Thecc1EG025180t1 96 hydeklgvgDSGGYWRSSTAEKPILDEQRKEIGFVRTLNFFefedaKKSRKDATKTRWLMHEYRL 160 999999987779*****************************8877667888899*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.077 | 2 | 176 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-25 | 4 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-13 | 5 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MYSLGVVFDP SDRDIVSHYL PMLISGESMS SLGDLQYVIG FEDIYSTKPS VFFDVNNGNG 60 LPFLKSNQRF IFTHRQRISK KNANGKRPRR ILESHHYDEK LGVGDSGGYW RSSTAEKPIL 120 DEQRKEIGFV RTLNFFEFED AKKSRKDATK TRWLMHEYRL PGDTFQEWVI CKIKDTSRSP 180 HDDYSDSIWE KELFGKLLLP HSDENHDHQD EYQSQIQSST VFNDGNLPSF EVDQLLDDDP 240 FKEVDQLLEI NDDNQIQTQS STVFNNGNLP RYEVDQLLYA HEKEVSKDDD PFKEVDQLLE 300 INDDDQIADY PFKEMEQLLG MNDNDPIADV DEALATMNSY YLQDLLG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007029305.2 | 0.0 | PREDICTED: NAC domain-containing protein 67 | ||||
TrEMBL | A0A061EZG5 | 0.0 | A0A061EZG5_THECC; Uncharacterized protein | ||||
STRING | EOY09807 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16333 | 2 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.3 | 2e-12 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG025180t1 |
Entrez Gene | 18599317 |
Publications ? help Back to Top | |||
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