PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG024899t2 | ||||||||
Common Name | TCM_024899 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 224aa MW: 23122.3 Da PI: 9.7218 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.6 | 5.1e-09 | 28 | 52 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC+ f+ Ck+Gd+C+FaHg Thecc1EG024899t2 28 KTRLCNKFSSAEGCKFGDKCHFAHG 52 8***********************9 PP | |||||||
2 | zf-CCCH | 39.2 | 1.1e-12 | 190 | 214 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G+rC+FaHg Thecc1EG024899t2 190 YKTKLCDNFAK-GSCTFGERCHFAHG 214 9**********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-14 | 24 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-4 | 26 | 53 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-8 | 26 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.46 | 26 | 54 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 28 | 52 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.19E-15 | 87 | 167 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.4E-12 | 95 | 165 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 8.1E-17 | 95 | 165 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.487 | 96 | 160 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.14E-14 | 98 | 160 | No hit | No description |
Pfam | PF00013 | 8.0E-12 | 98 | 162 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-16 | 185 | 220 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-9 | 188 | 219 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-8 | 189 | 215 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.793 | 189 | 216 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-10 | 190 | 214 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MNLAPAVPPA SRNMAAPPPI PNGSSAVKTR LCNKFSSAEG CKFGDKCHFA HGDWELGKPI 60 APSHDDPRGM ATIAGRMGSR MEPPPPSGPA ASFGASATAK ISVDASLAGA IIGKGGVHSK 120 QICRRTGAKL SIREHESDPT LRNIELEGSF EQIKQASAMV RELISSLGPV SGPAKTPGVP 180 GGQGHPGSNY KTKLCDNFAK GSCTFGERCH FAHGTAELRK SAV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007028981.1 | 1e-161 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q69XQ3 | 7e-79 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A061F4M5 | 1e-161 | A0A061F4M5_THECC; KH domain-containing protein / zinc finger family protein isoform 2 | ||||
STRING | EOY09483 | 1e-161 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 6e-65 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG024899t2 |
Entrez Gene | 18599098 |
Publications ? help Back to Top | |||
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