PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024899t1
Common NameTCM_024899
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 293aa    MW: 30537.7 Da    PI: 9.8706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024899t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063457225
                      -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                      k ++C  f+ t  C++G++C+F H
  Thecc1EG024899t1 34 KSKPCTKFFSTAGCPFGESCHFLH 57
                      7789******************** PP
2zf-CCCH27.17.3e-0997121226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       kt+lC+ f+    Ck+Gd+C+FaHg
  Thecc1EG024899t1  97 KTRLCNKFSSAEGCKFGDKCHFAHG 121
                       8***********************9 PP
3zf-CCCH38.71.6e-12259283126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykt+lC++fa+ G C +G+rC+FaHg
  Thecc1EG024899t1 259 YKTKLCDNFAK-GSCTFGERCHFAHG 283
                       9**********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7093260IPR000571Zinc finger, CCCH-type
SMARTSM003560.913259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-63358IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-83457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-1493126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4695123IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-495122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-895126IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-697121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.09E-15156236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.4E-16164234IPR004088K Homology domain, type 1
SMARTSM003224.4E-12164234IPR004087K Homology domain
PROSITE profilePS5008414.487165229IPR004088K Homology domain, type 1
CDDcd001051.47E-14167229No hitNo description
PfamPF000131.3E-11167231IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.8E-16254289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-8257288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.793258285IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-8258284IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10259283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDTRKRGRPE AGFNSNGGFK KTKPEMESTG VGSKSKPCTK FFSTAGCPFG ESCHFLHYVP  60
GGYNAVAQIM NLAPAVPPAS RNMAAPPPIP NGSSAVKTRL CNKFSSAEGC KFGDKCHFAH  120
GDWELGKPIA PSHDDPRGMA TIAGRMGSRM EPPPPSGPAA SFGASATAKI SVDASLAGAI  180
IGKGGVHSKQ ICRRTGAKLS IREHESDPTL RNIELEGSFE QIKQASAMVR ELISSLGPVS  240
GPAKTPGVPG GQGHPGSNYK TKLCDNFAKG SCTFGERCHF AHGTAELRKS AV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028981.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A061EXS80.0A0A061EXS8_THECC; KH domain-containing protein / zinc finger family protein isoform 1
STRINGEOY094830.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-63C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]