PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG024886t1

Common Name

TCM_024886

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 424aa MW: 47298.4 Da PI: 6.5663

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG024886t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	248	302	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Thecc1EG024886t1 248 KTRIRWTQDLHDKFVECVKRLGGAEKATPKAILKLMDTEGLTIFHVKSHLQKYRI 302 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.138	245	305	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-28	247	303	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.59E-16	247	302	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-24	248	303	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-8	252	301	IPR001005	SANT/Myb domain
Pfam	PF14379	9.3E-21	333	379	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MNSRKIDCQE HLEQNLGFSS VCNFEYVNHD GFQQPWNMGI RIQAPAMEEG SQQENPGAAK 60 TSNTIMSGFL SPASAFYATE RCMGFSEYGC QGDRSSYTSQ YNKSCNSHLP SFHASGDNFS 120 IESVAQDETN YELRNTFESL VKSQIYCNQY QKSSEKSYKI PCCNSQGSQV SPHDQSNFLG 180 NNAVTVGSHY SVPFRGNQDQ RAYCNSYSSP LAQLSIFQQG KQSSNCSSGT FSVSSGNSVS 240 TGAALASKTR IRWTQDLHDK FVECVKRLGG AEKATPKAIL KLMDTEGLTI FHVKSHLQKY 300 RIAKYMPDSA EGKSDKRSST SDVTQLDVKT GLHLTEALQL QLDVQRRLHE QLEIQRNLQL 360 RIEEQGRQLK MMIDQQQKTN ESLLKKQDLD ITPFDHDPSF SLEDVEVSIA ENSGDAHFPS 420 KIS*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MNSRKIDCQE HLEQNLGFSS VCNFEYVNHD GFQQPWNMGI RIQAPAMEEG SQQENPGAAK  60
TSNTIMSGFL SPASAFYATE RCMGFSEYGC QGDRSSYTSQ YNKSCNSHLP SFHASGDNFS  120
IESVAQDETN YELRNTFESL VKSQIYCNQY QKSSEKSYKI PCCNSQGSQV SPHDQSNFLG  180
NNAVTVGSHY SVPFRGNQDQ RAYCNSYSSP LAQLSIFQQG KQSSNCSSGT FSVSSGNSVS  240
TGAALASKTR IRWTQDLHDK FVECVKRLGG AEKATPKAIL KLMDTEGLTI FHVKSHLQKY  300
RIAKYMPDSA EGKSDKRSST SDVTQLDVKT GLHLTEALQL QLDVQRRLHE QLEIQRNLQL  360
RIEEQGRQLK MMIDQQQKTN ESLLKKQDLD ITPFDHDPSF SLEDVEVSIA ENSGDAHFPS  420
KIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	248	305	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	248	305	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-22	248	305	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	248	305	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	248	305	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	248	305	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	248	305	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	248	305	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	248	305	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	248	305	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	248	305	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	248	305	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007028967.2	0.0	PREDICTED: myb family transcription factor PHL5
TrEMBL	A0A061F4K8	0.0	A0A061F4K8_THECC; Myb-like HTH transcriptional regulator family protein, putative isoform 1
STRING	EOY09469	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-78	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG024886t1
Entrez Gene	18599089

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]