PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG024878t1

Common Name

TCM_024878

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 293aa MW: 32758.3 Da PI: 9.6472

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG024878t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.9	1.1e-28	158	212	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt eLH++Fv++v+ LGG+ekAtP++il+lm+ +gLt+ +vkSHLQkYR Thecc1EG024878t1 158 KTRIKWTVELHKKFVNCVNLLGGAEKATPRAILKLMESNGLTVLQVKSHLQKYRY 212 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.026	155	215	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-24	158	213	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.7E-15	158	212	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-22	158	212	IPR006447	Myb domain, plants
Pfam	PF00249	8.0E-9	162	211	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-12	242	289	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDGASSQPKQ KRLVLHSVTT PTTPLEQLAS AFCATDQSKS HIDFQLAERD SDEPQAPGYE 60 AIPTINQAKD TLLSIVNPHL WRNQCQRFTE KSNGKSYWSQ QGSLLSLDHG KLLAEATRNS 120 KVISLCSSRP EQQYPNISRI SGTRASSVSS GGRPSNIKTR IKWTVELHKK FVNCVNLLGG 180 AEKATPRAIL KLMESNGLTV LQVKSHLQKY RYAKYITGST QAKPDQGVDD DDLPMLYLKS 240 GMQVKEILQM QLEVQRHLCE QLEIQQNLQQ AIQEQGKQIQ MMLEQLKKTN KA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	158	215	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	158	215	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	158	215	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	158	215	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	158	215	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	158	215	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	158	215	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	158	215	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	158	215	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	158	215	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	158	215	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	158	215	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976479.1	0.0	PREDICTED: myb family transcription factor PHL5
TrEMBL	A0A061F4K2	0.0	A0A061F4K2_THECC; Myb-like HTH transcriptional regulator family protein
STRING	EOY09464	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27531	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	8e-39	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG024878t1
Entrez Gene	18599085

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]