PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG024862t1

Common Name

TCM_024862

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 483aa MW: 54343.2 Da PI: 7.5688

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG024862t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.5e-11	191	226	5	40
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka++++Le L++ Thecc1EG024862t1 191 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 226 7789***********************985555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-8	184	233	No hit	No description
SMART	SM00338	6.4E-9	187	259	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.266	189	233	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.76E-21	191	240	No hit	No description
Pfam	PF00170	5.3E-8	191	228	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-7	191	233	No hit	No description
PROSITE pattern	PS00036	0	194	209	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.6E-32	281	355	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MATSRGNMNN SIQLDHHQHN QHHHHQNQQQ QQQQQHQHQI QEHHQNQIPY AMMQSSSSSS 60 IPGNFISKDT GAYDLGELDQ ALFLYLDGQD PSTIQEQRHN SGMRPPTLNI FPSQPMHVEP 120 PLSTKTSRGL VSPATSGSKR PSEPSMELAN ARNDASGSAP DQPAKAVKRE GNRKGPTSSS 180 EQEGPKTPDP KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIRLTQLEQE LQRARAQGMF 240 FGGGVLGGEQ GLPVGINNIS SDAAVFDIEY ARWLEEHHRL MCELRAAVQE HLPENELRIF 300 VDNCLAHFDE LMNLKSMVAK TDVFHLVSGM WKTPAERCFT WMGGFRPSEL IKVILNQIEP 360 LTEQQIMGIC ALQQSTQEAE EALSQGLEAL NQSLSDIITS DSLSCPPNMT NYMGQMAIAM 420 NKLATLEGFV RQADNLRHQT IHRLHQILTT RQAARCFLAI AEYFHRLRAL SSLWLARPRQ 480 EQ*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MATSRGNMNN SIQLDHHQHN QHHHHQNQQQ QQQQQHQHQI QEHHQNQIPY AMMQSSSSSS  60
IPGNFISKDT GAYDLGELDQ ALFLYLDGQD PSTIQEQRHN SGMRPPTLNI FPSQPMHVEP  120
PLSTKTSRGL VSPATSGSKR PSEPSMELAN ARNDASGSAP DQPAKAVKRE GNRKGPTSSS  180
EQEGPKTPDP KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIRLTQLEQE LQRARAQGMF  240
FGGGVLGGEQ GLPVGINNIS SDAAVFDIEY ARWLEEHHRL MCELRAAVQE HLPENELRIF  300
VDNCLAHFDE LMNLKSMVAK TDVFHLVSGM WKTPAERCFT WMGGFRPSEL IKVILNQIEP  360
LTEQQIMGIC ALQQSTQEAE EALSQGLEAL NQSLSDIITS DSLSCPPNMT NYMGQMAIAM  420
NKLATLEGFV RQADNLRHQT IHRLHQILTT RQAARCFLAI AEYFHRLRAL SSLWLARPRQ  480
EQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269\|PubMed:12777042}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976610.1	0.0	PREDICTED: transcription factor TGA6
Swissprot	Q52MZ2	0.0	TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBL	A0A061EYD6	0.0	A0A061EYD6_THECC; BZIP transcription factor family protein
STRING	EOY09442	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	1e-176	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG024862t1
Entrez Gene	18599070

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]