PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024842t1
Common NameTCM_024842
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 429aa    MW: 47377 Da    PI: 9.1254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024842t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.6e-13356401655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Thecc1EG024842t1 356 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 401
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-16353415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-12354403No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14355411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-10356401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDSSTHQSYQ NQNNQPNSGL LRFRSAPSSL LANFTNNLDC GVNKGSFESD RLISRFMNSS  60
SGNSEIEDKS GTEVGVNYAN SQQSYSGLPP HYPRQSSAAS SSAMDSSYEL LGMDHHSQGK  120
PITSSLMRQS SSPPGLFTNL SVQNGVVLVL IYDYQFFLLS EALIGKRGDL RNSLIIVFEF  180
LVGYGGTRTR GYASMKGLGN YCGVNGTNGE LSPSSNRLKN QICFSSRLPS SLGMLSQISE  240
IGNESIRTDG PDDGKLGNSN SDARFYGTGY QYGSWNDSAH LTKNFSGLKR AQDNDRKFFS  300
TNQNGDLGNC VHVLSHHLSL PKTSNEMVAM EKFLHFQDSV PCKIRAKRGC ATHPRSIAER  360
VRRTRISERM RKLQELVPNM DKQTNTADML DLAVEYIKDL QKQFKTLSDN RANCKCLHIQ  420
KPVPNQIV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281742.10.0transcription factor bHLH130 isoform X1
SwissprotQ66GR31e-105BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A061EXM60.0A0A061EXM6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY094230.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-105bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]