PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG024828t1 | ||||||||
Common Name | TCM_024828 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 360aa MW: 39749.3 Da PI: 5.9069 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.4 | 1.3e-08 | 203 | 250 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Thecc1EG024828t1 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 250 8*************************9....888999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-15 | 197 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.04E-8 | 197 | 254 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-14 | 199 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.519 | 199 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-6 | 203 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-8 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEPKARTTET RSNGTTSDGD EAVALESLQF TDEIHRLISA PSTDNASSFT ALLELPAPQA 60 VELLHSPESA KLIAAPAPNV EDIKGSFHFP SNTGLIERAA RFSVFAGDSN NNNNKTGSAE 120 TTSNNSSQNP QKEVKSEPAE TESCQPLVSD PTVEKRSIKR KDREKKVKGS TKKSKTAANE 180 SSEDAEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD 240 EIINHVQSLQ RQVEFLSMRL AAVNPRIDFN LDSIFTAESG SLMDGNFPSM VMPLMWPEVQ 300 VNGNRQQYQQ QWHFDAIQQP IWVREEVCNN YITPENSLLS YDSSANSATL HSNQVKMEL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007028901.2 | 0.0 | PREDICTED: transcription factor bHLH48 isoform X1 | ||||
Swissprot | Q3EAI1 | 1e-98 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A061EXK6 | 0.0 | A0A061EXK6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | ||||
STRING | EOY09403 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2576 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-107 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG024828t1 |
Entrez Gene | 18599043 |
Publications ? help Back to Top | |||
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