PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024788t1
Common NameTCM_024788
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 362aa    MW: 40502 Da    PI: 6.6153
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024788t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001284306123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk F  + + ++H +++
  Thecc1EG024788t1 284 FMCRKCGKAFAVRGDWRTHEKNC 306
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64200227IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.4E-6200219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.58200222IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-6266304No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5280304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808284304IPR007087Zinc finger, C2H2
SMARTSM0035549284304IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MADYPYSNFF SGWFKFNPLQ HYPPPNPPPQ QPSSYTQNYF YSSNTTFMTN ETNPFFHYQT  60
SSSSPPSPPV REALPLLSLS PTRHDKDEEV QDDEDQDQEH SCTAMDVDKS KGKEEGRLLF  120
TNSAGGASAS AAEDETVTVA LHIGLPSPSA SELASVLSSS SEITDKDGDG DDSGYPVNRL  180
NKGQYWIPTP SQILIGPTQF SCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG  240
MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR  300
THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHAAYGI DGLEEDDEPA SEVEQDNESM  360
Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4857321e-149AM485732.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X068454.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028866.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-151ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A061EXH20.0A0A061EXH2_THECC; C2H2-type zinc finger family protein
STRINGEOY093680.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]