PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024756t1
Common NameTCM_024756
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 284aa    MW: 31971.8 Da    PI: 5.9902
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024756t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-202878155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Thecc1EG024756t1 28 CQYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                      68*****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-132878IPR001471AP2/ERF domain
CDDcd000181.77E-312888No hitNo description
PROSITE profilePS5103222.6292986IPR001471AP2/ERF domain
SMARTSM003807.3E-392992IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-212987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-312987IPR001471AP2/ERF domain
PRINTSPR003672.2E-103041IPR001471AP2/ERF domain
PRINTSPR003672.2E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MESYRRSPLK PWKKGPTRGK GGPQNASCQY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPE AYLNLPHLQP NSNPPNKLQK FKWIPSKNFV SMFPSCGLLN  120
INAQPSVHVI HQRLQELKKN GVLNQTGSSS SSSCESKTDI QIINDKTPAE DPQMKEKDVE  180
ISSDKMAGAY EDKPQIDLHE FLQQLGILRE EKQSEGAETT ESLTATDSSI KDYDEVAVFA  240
ENSFNWDAMI EMHGVADYQG AEASFQVHDA QEDLTFPASI WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-182986260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028832.20.0PREDICTED: dehydration-responsive element-binding protein 2F
SwissprotQ9SVX51e-95DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A061F4760.0A0A061F476_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY093340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-85ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]