PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024747t2
Common NameTCM_024747
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 728aa    MW: 78694 Da    PI: 6.1018
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024747t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07306326526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ G C++Gd C +aHg
  Thecc1EG024747t2 306 PCPDFRK-GACRRGDMCEYAHG 326
                       8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.3E-1843184IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-1083156IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.27E-1784193IPR020683Ankyrin repeat-containing domain
CDDcd002048.27E-1586160No hitNo description
SMARTSM002480.001887117IPR002110Ankyrin repeat
PROSITE profilePS5029719.1287180IPR020683Ankyrin repeat-containing domain
PRINTSPR014155.4E-588103IPR002110Ankyrin repeat
SMARTSM002486.1E-4122154IPR002110Ankyrin repeat
PROSITE profilePS5008812.342122157IPR002110Ankyrin repeat
PRINTSPR014155.4E-5141155IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4306328IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035643336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MCCGSERLKQ TPSPTTSNIS FEDSRHPSVD MNHLTVETED AFASLLELAA NNDVEGFKLS  60
IERDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVAATYGS IDVIKLILSS SDADVNRVCG  120
HDKSTALHCA ASGGAVNAID VVKLLLAAGA DANMVDANGH LPVDVVVVPP KLQALKLTLE  180
ELLATESSVL ERNLRVSTAV ANSSSPPLSP SQENGSPSSG SDSPMKSKST DAPISSASEK  240
KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTAE  360
ELRPLYVSTG SAVPSPRSST SGATAMDFAA ALSLLPGSPS SVSVMSPSPF TPPMSPSANG  420
MSHSNVGWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPNE DFNLLPDFDV QQQQLINELS  480
SLTQPSMSSN SLNRSGRLKT LTPSNLDDLF SAESSSPRYS DQALASAVFS PTHKSAVLNQ  540
FQQQQSMLSP INTNFSPKNI EHPLLQASLS GRMSPRNVEP ISPMGSRVSM LAQREKQQQF  600
RSLSSRELGS GSTAIVGSPV NSWSKWGSSN GKPDWAVNAD ELGKLRRSSS FELGNGEEPD  660
LSWVQSLVKE SPTEIKDKMA APVSGVAPNV SSSEGSNLNT QIDPVDHAVL GAWLEQMQLD  720
QLVAQQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3135030.0KF313503.1 Firmiana danxiaensis microsatellite a3533_SSR46 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017977215.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_017977216.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A061EXD20.0A0A061EXD2_THECC; C3HL domain class transcription factor isoform 1
STRINGEOY093230.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]