PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG024747t2 | ||||||||
Common Name | TCM_024747 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 728aa MW: 78694 Da PI: 6.1018 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 306 | 326 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Thecc1EG024747t2 306 PCPDFRK-GACRRGDMCEYAHG 326 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 2.3E-18 | 43 | 184 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.1E-10 | 83 | 156 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.27E-17 | 84 | 193 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 8.27E-15 | 86 | 160 | No hit | No description |
SMART | SM00248 | 0.0018 | 87 | 117 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 19.12 | 87 | 180 | IPR020683 | Ankyrin repeat-containing domain |
PRINTS | PR01415 | 5.4E-5 | 88 | 103 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 6.1E-4 | 122 | 154 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.342 | 122 | 157 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.4E-5 | 141 | 155 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 301 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-5 | 306 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 334 | 364 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 43 | 336 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MCCGSERLKQ TPSPTTSNIS FEDSRHPSVD MNHLTVETED AFASLLELAA NNDVEGFKLS 60 IERDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVAATYGS IDVIKLILSS SDADVNRVCG 120 HDKSTALHCA ASGGAVNAID VVKLLLAAGA DANMVDANGH LPVDVVVVPP KLQALKLTLE 180 ELLATESSVL ERNLRVSTAV ANSSSPPLSP SQENGSPSSG SDSPMKSKST DAPISSASEK 240 KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTAE 360 ELRPLYVSTG SAVPSPRSST SGATAMDFAA ALSLLPGSPS SVSVMSPSPF TPPMSPSANG 420 MSHSNVGWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPNE DFNLLPDFDV QQQQLINELS 480 SLTQPSMSSN SLNRSGRLKT LTPSNLDDLF SAESSSPRYS DQALASAVFS PTHKSAVLNQ 540 FQQQQSMLSP INTNFSPKNI EHPLLQASLS GRMSPRNVEP ISPMGSRVSM LAQREKQQQF 600 RSLSSRELGS GSTAIVGSPV NSWSKWGSSN GKPDWAVNAD ELGKLRRSSS FELGNGEEPD 660 LSWVQSLVKE SPTEIKDKMA APVSGVAPNV SSSEGSNLNT QIDPVDHAVL GAWLEQMQLD 720 QLVAQQN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF313503 | 0.0 | KF313503.1 Firmiana danxiaensis microsatellite a3533_SSR46 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017977215.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_017977216.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A061EXD2 | 0.0 | A0A061EXD2_THECC; C3HL domain class transcription factor isoform 1 | ||||
STRING | EOY09323 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG024747t2 |
Entrez Gene | 18598996 |
Publications ? help Back to Top | |||
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