PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024732t1
Common NameTCM_024732
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NF-YA
Protein Properties Length: 362aa    MW: 39815.5 Da    PI: 8.559
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024732t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32174230158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+Rg+gGrF
  Thecc1EG024732t1 174 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHLHAMRRARGCGGRF 230
                       69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-37172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.337173233IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-27175230IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-24176198IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.0E-24207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MHQKLEGKNH PEPNANNNKP YTVRSQPWWC STQQDASSTD VLGESRTNLA PGKHPNGGLG  60
TQTSESQHGE LTDQKICASK GMWLTVLPHP DGKCGDEQPH LQHAVPFMPP TMGEYIAPRT  120
RLELVGHSIA CPSYPYADPY YGGAMPPYGP QSLVHPHCLG VHPARMALPL EMAEEPVYVN  180
AKQYHGILRR RQSRAKAELE KKLIKVRKPY LHESRHLHAM RRARGCGGRF LNTKKLDSDA  240
SNATPDKGSD TSSNLSSHPT NSLSGKSISS HMSQDVNSSG GHQEVTESEL PGTDMQQAFS  300
NSNGKIYING NGNVCYSHHQ GFHFSTSRSL SDKMMEEGDC PRQQHERIVA NGVPHRALTI  360
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-21174238266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028810.20.0PREDICTED: nuclear transcription factor Y subunit A-1
TrEMBLA0A061EY160.0A0A061EY16_THECC; Nuclear factor Y, putative
STRINGEOY093120.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156021015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-37nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]