PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024711t1
Common NameTCM_024711
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 296aa    MW: 32659 Da    PI: 8.2468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024711t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045230252223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +Cp Cg  Fs+  +L+ H  + H
  Thecc1EG024711t1 230 ECPQCGAKFSSVTTLVEHVEKvH 252
                       5*****************99888 PP
2zf-C2H215.35.7e-05267289223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +Cp C+k F+++  L+ H  + H
  Thecc1EG024711t1 267 VCPRCSKGFRDPVALVEHVERdH 289
                       7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.88E-13650No hitNo description
PROSITE profilePS510397.9641056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.108.9E-111153IPR000058Zinc finger, AN1-type
PfamPF014284.0E-141351IPR000058Zinc finger, AN1-type
SMARTSM001545.2E-41352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.0E-1191148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183106.08E-993143No hitNo description
PROSITE profilePS510397.98298146IPR000058Zinc finger, AN1-type
PfamPF014282.3E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.012101142IPR000058Zinc finger, AN1-type
PROSITE profilePS5015710.097229257IPR007087Zinc finger, C2H2
SMARTSM003550.019229252IPR015880Zinc finger, C2H2-like
PfamPF138946.5E-4230252No hitNo description
PROSITE patternPS000280231252IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-4233252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767266294IPR007087Zinc finger, C2H2
SMARTSM003559.1266289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280268289IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVEDCKQ IDFLPFTCDR CRLVFCLEHR SYIKHRCPKA DKKDVTVVIC  60
PLCAKGVHLI PDEDPNITWE THVNTECDPS NYDKVTKKKK CPVPGCREVL TFSNTIKCRD  120
CTIDHCLKHR FGPDHNCPGP KKPDSGFPFM GLLSRSRKEE SKPNRAPATS STNWATSFRN  180
AASTVRATAE ASMTKLSSEL SQKWQIARDG AGLSGSSSSS SNGSTAQVEE CPQCGAKFSS  240
VTTLVEHVEK VHERNNQSRV FKMSIDVCPR CSKGFRDPVA LVEHVERDHG GTSKA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028784.20.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-133SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A061EWW30.0A0A061EWW3_THECC; Zinc finger (C2H2 type, AN1-like) family protein
STRINGEOY092860.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-133C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]